Evidence for a coding pattern on the non-coding strand of the E. coli genome - PubMed (original) (raw)
Evidence for a coding pattern on the non-coding strand of the E. coli genome
C Alff-Steinberger. Nucleic Acids Res. 1984.
Free PMC article
Abstract
Analysis of codon usage frequency for the combined coding sequences of 52 E. coli genes, taken from the European Molecular Biology Laboratory Nucleotide Sequence Data Library, Release 2, shows that there is a significant positive correlation between the frequency with which a given codon appears on the coding strand and the frequency with which it appears, in phase, on the non-coding strand.
Similar articles
- Sequences of the E. coli uvrC gene and protein.
Sancar GB, Sancar A, Rupp WD. Sancar GB, et al. Nucleic Acids Res. 1984 Jun 11;12(11):4593-608. doi: 10.1093/nar/12.11.4593. Nucleic Acids Res. 1984. PMID: 6330676 Free PMC article. - Detection of genes in Escherichia coli sequences determined by genome projects and prediction of protein production levels, based on multivariate diversity in codon usage.
Kanaya S, Kudo Y, Nakamura Y, Ikemura T. Kanaya S, et al. Comput Appl Biosci. 1996 Jun;12(3):213-25. doi: 10.1093/bioinformatics/12.3.213. Comput Appl Biosci. 1996. PMID: 8872390 - Codon usage in bacteria: correlation with gene expressivity.
Gouy M, Gautier C. Gouy M, et al. Nucleic Acids Res. 1982 Nov 25;10(22):7055-74. doi: 10.1093/nar/10.22.7055. Nucleic Acids Res. 1982. PMID: 6760125 Free PMC article. - Complete nucleotide sequence of the E. coli glyA gene.
Plamann MD, Stauffer LT, Urbanowski ML, Stauffer GV. Plamann MD, et al. Nucleic Acids Res. 1983 Apr 11;11(7):2065-75. doi: 10.1093/nar/11.7.2065. Nucleic Acids Res. 1983. PMID: 6300791 Free PMC article. - The sequence asymmetry of the Escherichia coli chromosome appears to be independent of strand or function and may be evolutionarily conserved.
Rogerson AC. Rogerson AC. Nucleic Acids Res. 1989 Jul 25;17(14):5547-63. doi: 10.1093/nar/17.14.5547. Nucleic Acids Res. 1989. PMID: 2474802 Free PMC article.
Cited by
- Cloning, sequencing, and overexpression of the Anaerobiospirillum succiniciproducens phosphoenolpyruvate carboxykinase (pckA) gene.
Laivenieks M, Vieille C, Zeikus JG. Laivenieks M, et al. Appl Environ Microbiol. 1997 Jun;63(6):2273-80. doi: 10.1128/aem.63.6.2273-2280.1997. Appl Environ Microbiol. 1997. PMID: 9172347 Free PMC article. - Antisense overlapping open reading frames in genes from bacteria to humans.
Merino E, Balbás P, Puente JL, Bolívar F. Merino E, et al. Nucleic Acids Res. 1994 May 25;22(10):1903-8. doi: 10.1093/nar/22.10.1903. Nucleic Acids Res. 1994. PMID: 8208617 Free PMC article. - Purification and characterization of Streptococcus sobrinus dextranase produced in recombinant Escherichia coli and sequence analysis of the dextranase gene.
Wanda SY, Curtiss R 3rd. Wanda SY, et al. J Bacteriol. 1994 Jul;176(13):3839-50. doi: 10.1128/jb.176.13.3839-3850.1994. J Bacteriol. 1994. PMID: 8021165 Free PMC article. - On concerted origin of transfer RNAs with complementary anticodons.
Rodin S, Ohno S, Rodin A. Rodin S, et al. Orig Life Evol Biosph. 1993 Dec;23(5-6):393-418. doi: 10.1007/BF01582088. Orig Life Evol Biosph. 1993. PMID: 7509479 - Sense in antisense?
Forsdyke DR. Forsdyke DR. J Mol Evol. 1995 Nov;41(5):582-6. doi: 10.1007/BF00175816. J Mol Evol. 1995. PMID: 7490772
References
- Proc Natl Acad Sci U S A. 1969 Oct;64(2):584-91 - PubMed
- Nature. 1978 Aug 24;274(5673):765-9 - PubMed
- Proc Natl Acad Sci U S A. 1978 Sep;75(9):4271-5 - PubMed
- Proc Natl Acad Sci U S A. 1979 Apr;76(4):1697-701 - PubMed
- Proc Natl Acad Sci U S A. 1979 Apr;76(4):1706-10 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Medical