Near identity of 3- RNA secondary structure in bromoviruses and cucumber mosaic virus - PubMed (original) (raw)
Comparative Study
Near identity of 3- RNA secondary structure in bromoviruses and cucumber mosaic virus
P Ahlquist et al. Cell. 1981 Jan.
Abstract
The 3- terminal sequences of RNAs 1, 2, 3 and 4 from each of the three bromoviruses (brome mosaic, cowpea chlorotic mottle and broad bean mottle viruses) and also from cucumber mosaic virus display interviral sequence similarity in addition to strong intraviral homology. Interviral similarity is much more evident when RNA secondary, rather than primary, structures are compared. The last 190 bases of the various RNAs can fold into strikingly similar, extensively base-paired secondary structures whose common features are supported by RNA structure mapping. The extreme 3' end of each viral RNA can base-pair in two distinct configurations. Bromovirus RNA 3s each contain an unusually accessible internal oligo(A) sequence which, in brome mosaic virus at least, is located in the intercistronic noncoding region. Functional implications of these structural features are discussed.
Similar articles
- Complete nucleotide sequences of the coat protein messenger RNAs of brome mosaic virus and cowpea chlorotic mottle virus.
Dasgupta R, Kaesberg P. Dasgupta R, et al. Nucleic Acids Res. 1982 Jan 22;10(2):703-13. doi: 10.1093/nar/10.2.703. Nucleic Acids Res. 1982. PMID: 6895941 Free PMC article. - The RNAs of bromoviruses: 3'-terminal sequences of the four brome mosaic virus RNAs and comparison with cowpea chlorotic mottle virus RNA 4.
Gunn MR, Symons RH. Gunn MR, et al. FEBS Lett. 1980 Jun 16;115(1):77-82. doi: 10.1016/0014-5793(80)80730-7. FEBS Lett. 1980. PMID: 7389920 No abstract available. - Sequence of cowpea chlorotic mottle virus RNAs 2 and 3 and evidence of a recombination event during bromovirus evolution.
Allison RF, Janda M, Ahlquist P. Allison RF, et al. Virology. 1989 Sep;172(1):321-30. doi: 10.1016/0042-6822(89)90134-7. Virology. 1989. PMID: 2773323 - Translation of plant virus messenger RNAs.
Atabekov JG, Morozov SY. Atabekov JG, et al. Adv Virus Res. 1979;25:1-91. doi: 10.1016/s0065-3527(08)60568-0. Adv Virus Res. 1979. PMID: 393095 Review. No abstract available. - RNA-RNA recombination in plant virus replication and evolution.
Sztuba-Solińska J, Urbanowicz A, Figlerowicz M, Bujarski JJ. Sztuba-Solińska J, et al. Annu Rev Phytopathol. 2011;49:415-43. doi: 10.1146/annurev-phyto-072910-095351. Annu Rev Phytopathol. 2011. PMID: 21529157 Review.
Cited by
- Characterization and engineering of sequences controlling in vivo synthesis of brome mosaic virus subgenomic RNA.
French R, Ahlquist P. French R, et al. J Virol. 1988 Jul;62(7):2411-20. doi: 10.1128/JVI.62.7.2411-2420.1988. J Virol. 1988. PMID: 3373573 Free PMC article. - Localization of the replicase recognition site within brome mosaic virus RNA by hybrid-arrested RNA synthesis.
Ahlquist P, Bujarski JJ, Kaesberg P, Hall TC. Ahlquist P, et al. Plant Mol Biol. 1984 Jan;3(1):37-44. doi: 10.1007/BF00023414. Plant Mol Biol. 1984. PMID: 24310258 - Diversity and modularity of tyrosine-accepting tRNA-like structures.
Sherlock ME, Langeberg CJ, Kieft JS. Sherlock ME, et al. RNA. 2024 Feb 16;30(3):213-222. doi: 10.1261/rna.079768.123. RNA. 2024. PMID: 38164607 - The nucleotide sequence of tobacco rattle virus RNA-2 (CAM strain).
Bergh ST, Koziel MG, Huang SC, Thomas RA, Gilley DP, Siegel A. Bergh ST, et al. Nucleic Acids Res. 1985 Dec 9;13(23):8507-18. doi: 10.1093/nar/13.23.8507. Nucleic Acids Res. 1985. PMID: 3841203 Free PMC article.