Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes - PubMed (original) (raw)

Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes

H J Sofia et al. Nucleic Acids Res. 1994.

Free PMC article

Abstract

The DNA sequence of a 225.4 kilobase segment of the Escherichia coli K-12 genome is described here, from 76.0 to 81.5 minutes on the genetic map. This brings the total of contiguous sequence from the E.coli genome project to 725.1 kb (76.0 to 92.8 minutes). We found 191 putative coding genes (ORFs) of which 72 genes were previously known, and 110 of which remain unidentified despite literature and similarity searches. Seven new genes--arsE, arsF, arsG, treF, xylR, xylG, and xylH--were identified as well as the previously mapped pit and dctA genes. The arrangement of proposed genes relative to possible promoters and terminators suggests 90 potential transcription units. Other features include 19 REP elements, 95 computer-predicted bends, 50 Chi sites, and one grey hole. Thirty-one putative signal peptides were found, including those of thirteen known membrane or periplasmic proteins. One tRNA gene (proK) and two insertion sequences (IS5 and IS150) are located in this segment. The genes in this region are organized with equal numbers oriented with or against replication.

PubMed Disclaimer

Similar articles

• Analysis of the Escherichia coli genome. IV. DNA sequence of the region from 89.2 to 92.8 minutes.
  Blattner FR, Burland V, Plunkett G 3rd, Sofia HJ, Daniels DL. Blattner FR, et al. Nucleic Acids Res. 1993 Nov 25;21(23):5408-17. doi: 10.1093/nar/21.23.5408. Nucleic Acids Res. 1993. PMID: 8265357 Free PMC article.
• Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
  Plunkett G 3rd, Burland V, Daniels DL, Blattner FR. Plunkett G 3rd, et al. Nucleic Acids Res. 1993 Jul 25;21(15):3391-8. doi: 10.1093/nar/21.15.3391. Nucleic Acids Res. 1993. PMID: 8346018 Free PMC article.
• Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes.
  Burland V, Plunkett G 3rd, Sofia HJ, Daniels DL, Blattner FR. Burland V, et al. Nucleic Acids Res. 1995 Jun 25;23(12):2105-19. doi: 10.1093/nar/23.12.2105. Nucleic Acids Res. 1995. PMID: 7610040 Free PMC article.
• Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X.
  Galibert F, Alexandraki D, Baur A, Boles E, Chalwatzis N, Chuat JC, Coster F, Cziepluch C, De Haan M, Domdey H, Durand P, Entian KD, Gatius M, Goffeau A, Grivell LA, Hennemann A, Herbert CJ, Heumann K, Hilger F, Hollenberg CP, Huang ME, Jacq C, Jauniaux JC, Katsoulou C, Karpfinger-Hartl L, et al. Galibert F, et al. EMBO J. 1996 May 1;15(9):2031-49. EMBO J. 1996. PMID: 8641269 Free PMC article. Review.
• Colibri: a functional data base for the Escherichia coli genome.
  Médigue C, Viari A, Hénaut A, Danchin A. Médigue C, et al. Microbiol Rev. 1993 Sep;57(3):623-54. doi: 10.1128/mr.57.3.623-654.1993. Microbiol Rev. 1993. PMID: 8246843 Free PMC article. Review.

Cited by

• Periplasm-enriched fractions from Xanthomonas citri subsp. citri type A and X. fuscans subsp. aurantifolii type B present distinct proteomic profiles under in vitro pathogenicity induction.
  Zandonadi FS, Ferreira SP, Alexandrino AV, Carnielli CM, Artier J, Barcelos MP, Nicolela NCS, Prieto EL, Goto LS, Belasque J Jr, Novo-Mansur MTM. Zandonadi FS, et al. PLoS One. 2020 Dec 18;15(12):e0243867. doi: 10.1371/journal.pone.0243867. eCollection 2020. PLoS One. 2020. PMID: 33338036 Free PMC article.
• Biochemical routes for uptake and conversion of xylose by microorganisms.
  Zhao Z, Xian M, Liu M, Zhao G. Zhao Z, et al. Biotechnol Biofuels. 2020 Feb 1;13:21. doi: 10.1186/s13068-020-1662-x. eCollection 2020. Biotechnol Biofuels. 2020. PMID: 32021652 Free PMC article. Review.
• Genetic mechanisms of arsenic detoxification and metabolism in bacteria.
  Yan G, Chen X, Du S, Deng Z, Wang L, Chen S. Yan G, et al. Curr Genet. 2019 Apr;65(2):329-338. doi: 10.1007/s00294-018-0894-9. Epub 2018 Oct 22. Curr Genet. 2019. PMID: 30349994 Review.
• Pseudomonas putida CSV86: a candidate genome for genetic bioaugmentation.
  Paliwal V, Raju SC, Modak A, Phale PS, Purohit HJ. Paliwal V, et al. PLoS One. 2014 Jan 24;9(1):e84000. doi: 10.1371/journal.pone.0084000. eCollection 2014. PLoS One. 2014. PMID: 24475028 Free PMC article.
• Screening and identification of genetic loci involved in producing more/denser inclusion bodies in Escherichia coli.
  Pandey N, Sachan A, Chen Q, Ruebling-Jass K, Bhalla R, Panguluri KK, Rouviere PE, Cheng Q. Pandey N, et al. Microb Cell Fact. 2013 May 2;12:43. doi: 10.1186/1475-2859-12-43. Microb Cell Fact. 2013. PMID: 23638724 Free PMC article.

References

1. 1. J Bacteriol. 1970 Jul;103(1):178-83 - PubMed
2. 1. Biochim Biophys Acta. 1970 Mar 24;201(3):497-9 - PubMed
3. 1. J Bacteriol. 1973 Dec;116(3):1258-66 - PubMed
4. 1. J Bacteriol. 1974 Feb;117(2):641-51 - PubMed
5. 1. J Bacteriol. 1991 Dec;173(23):7410-1 - PubMed

Publication types

MeSH terms

Substances

LinkOut - more resources

• Full Text Sources

  • Europe PubMed Central
  • PubMed Central
  • Silverchair Information Systems

• Other Literature Sources

  • The Lens - Patent Citations

• Molecular Biology Databases

  • BioCyc
  • Gene Ontology