The effect of background selection against deleterious mutations on weakly selected, linked variants - PubMed (original) (raw)
The effect of background selection against deleterious mutations on weakly selected, linked variants
B Charlesworth. Genet Res. 1994 Jun.
Abstract
This paper analyses the effects of selection against deleterious alleles maintained by mutation ('background selection') on rates of evolution and levels of genetic diversity at weakly selected, completely linked, loci. General formulae are derived for the expected rates of gene substitution and genetic diversity, relative to the neutral case, as a function of selection and dominance coefficients at the loci in question, and of the frequency of gametes that are free of deleterious mutations with respect to the loci responsible for background selection. As in the neutral case, most effects of background selection can be predicted by considering the effective size of the population to be multiplied by the frequency of mutation-free gametes. Levels of genetic diversity can be sharply reduced by background selection, with the result that values for sites under selection approach those for neutral variants subject to the same regime of background selection. Rates of fixation of slightly deleterious mutations are increased by background selection, and rates of fixation of advantageous mutations are reduced. The properties of sex-linked and autosomal loci in random-mating populations are compared, and the effects of background selection on asexual and self-fertilizing populations are considered. The implications of these results for the interpretation of studies of molecular evolution and variation are discussed.
Similar articles
- The effect of deleterious mutations on neutral molecular variation.
Charlesworth B, Morgan MT, Charlesworth D. Charlesworth B, et al. Genetics. 1993 Aug;134(4):1289-303. doi: 10.1093/genetics/134.4.1289. Genetics. 1993. PMID: 8375663 Free PMC article. - The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations.
Charlesworth B, Nordborg M, Charlesworth D. Charlesworth B, et al. Genet Res. 1997 Oct;70(2):155-74. doi: 10.1017/s0016672397002954. Genet Res. 1997. PMID: 9449192 - Selective Strolls: Fixation and Extinction in Diploids Are Slower for Weakly Selected Mutations Than for Neutral Ones.
Mafessoni F, Lachmann M. Mafessoni F, et al. Genetics. 2015 Dec;201(4):1581-9. doi: 10.1534/genetics.115.178160. Epub 2015 Oct 23. Genetics. 2015. PMID: 26500260 Free PMC article. - How can the low levels of DNA sequence variation in regions of the drosophila genome with low recombination rates be explained?
Hudson RR. Hudson RR. Proc Natl Acad Sci U S A. 1994 Jul 19;91(15):6815-8. doi: 10.1073/pnas.91.15.6815. Proc Natl Acad Sci U S A. 1994. PMID: 8041702 Free PMC article. Review. - The effects of deleterious mutations on evolution at linked sites.
Charlesworth B. Charlesworth B. Genetics. 2012 Jan;190(1):5-22. doi: 10.1534/genetics.111.134288. Genetics. 2012. PMID: 22219506 Free PMC article. Review.
Cited by
- A population genetics-phylogenetics approach to inferring natural selection in coding sequences.
Wilson DJ, Hernandez RD, Andolfatto P, Przeworski M. Wilson DJ, et al. PLoS Genet. 2011 Dec;7(12):e1002395. doi: 10.1371/journal.pgen.1002395. Epub 2011 Dec 1. PLoS Genet. 2011. PMID: 22144911 Free PMC article. - What is the impact of transposable elements on host genome variability?
Emery PT, Robinson TE, Duddington R, Brookfield JF. Emery PT, et al. Proc Biol Sci. 1999 Aug 22;266(1429):1677-83. doi: 10.1098/rspb.1999.0831. Proc Biol Sci. 1999. PMID: 10501038 Free PMC article. - Genome wide analyses reveal little evidence for adaptive evolution in many plant species.
Gossmann TI, Song BH, Windsor AJ, Mitchell-Olds T, Dixon CJ, Kapralov MV, Filatov DA, Eyre-Walker A. Gossmann TI, et al. Mol Biol Evol. 2010 Aug;27(8):1822-32. doi: 10.1093/molbev/msq079. Epub 2010 Mar 18. Mol Biol Evol. 2010. PMID: 20299543 Free PMC article. - Soft selective sweeps: Addressing new definitions, evaluating competing models, and interpreting empirical outliers.
Johri P, Stephan W, Jensen JD. Johri P, et al. PLoS Genet. 2022 Feb 24;18(2):e1010022. doi: 10.1371/journal.pgen.1010022. eCollection 2022 Feb. PLoS Genet. 2022. PMID: 35202407 Free PMC article. - The inflated mitochondrial genomes of siphonous green algae reflect processes driving expansion of noncoding DNA and proliferation of introns.
Repetti SI, Jackson CJ, Judd LM, Wick RR, Holt KE, Verbruggen H. Repetti SI, et al. PeerJ. 2020 Jan 3;8:e8273. doi: 10.7717/peerj.8273. eCollection 2020. PeerJ. 2020. PMID: 31915577 Free PMC article.
MeSH terms
LinkOut - more resources
Research Materials