Partial sequence analysis of 130 randomly selected maize cDNA clones - PubMed (original) (raw)

Comparative Study

Partial sequence analysis of 130 randomly selected maize cDNA clones

C S Keith et al. Plant Physiol. 1993 Jan.

Abstract

As part of a project to identify novel maize (Zea mays L. cv B73) genes functionally, we have partially sequenced 130 randomly selected clones from a maize leaf cDNA library. Data base comparisons revealed seven previously sequenced maize cDNAs and 18 cDNAs with sequence similarity to related maize genes or to genes from other organisms. One hundred five cDNAs show little or no similarity to previously sequenced genes. Our results also establish the suitability of this library for large-scale sequencing in terms of its large insert size, proper insert orientation, and low duplication rate.

PubMed Disclaimer

Similar articles

• Partial sequencing and mapping of clones from two maize cDNA libraries.
  Shen B, Carneiro N, Torres-Jerez I, Stevenson B, McCreery T, Helentjaris T, Baysdorfer C, Almira E, Ferl RJ, Habben JE, et al. Shen B, et al. Plant Mol Biol. 1994 Nov;26(4):1085-101. doi: 10.1007/BF00040691. Plant Mol Biol. 1994. PMID: 7811968
• PCR-generated cDNA library of transition-stage maize embryos: cloning and expression of calmodulin genes during early embryogenesis.
  Breton C, Chaboud A, Matthys-Rochon E, Bates EE, Cock JM, Fromm H, Dumas C. Breton C, et al. Plant Mol Biol. 1995 Jan;27(1):105-13. doi: 10.1007/BF00019182. Plant Mol Biol. 1995. PMID: 7865780
• Characterization of three distinct cDNA clones encoding cysteine proteinases from maize (Zea mays L.) callus.
  Pechan T, Jiang B, Steckler D, Ye L, Lin L, Luthe DS, Williams WP. Pechan T, et al. Plant Mol Biol. 1999 May;40(1):111-9. doi: 10.1023/a:1026494813936. Plant Mol Biol. 1999. PMID: 10394950
• Complete nucleotide sequence of the maize (Zea mays L.) sucrose synthase 2 cDNA.
  Huang XF, Nguyen-Quoc B, Chourey PS, Yelle S. Huang XF, et al. Plant Physiol. 1994 Jan;104(1):293-4. doi: 10.1104/pp.104.1.293. Plant Physiol. 1994. PMID: 8115551 Free PMC article. No abstract available.
• Analysis of a sequenced cDNA library from multiple sclerosis lesions.
  Becker KG, Mattson DH, Powers JM, Gado AM, Biddison WE. Becker KG, et al. J Neuroimmunol. 1997 Jul;77(1):27-38. doi: 10.1016/s0165-5728(97)00045-3. J Neuroimmunol. 1997. PMID: 9209265 Review.

Cited by

• Comparative mapping of the barley Ppd-H1 photoperiod response gene region, which lies close to a junction between two rice linkage segments.
  Dunford RP, Yano M, Kurata N, Sasaki T, Huestis G, Rocheford T, Laurie DA. Dunford RP, et al. Genetics. 2002 Jun;161(2):825-34. doi: 10.1093/genetics/161.2.825. Genetics. 2002. PMID: 12072477 Free PMC article.
• Expressed Sequence Tags from Developing Castor Seeds.
  Van De Loo FJ, Turner S, Somerville C. Van De Loo FJ, et al. Plant Physiol. 1995 Jul;108(3):1141-1150. doi: 10.1104/pp.108.3.1141. Plant Physiol. 1995. PMID: 12228533 Free PMC article.
• Small GTP-Binding Proteins and Membrane Biogenesis in Plants.
  Verma D, Cheon C 3rd, Hong Z. Verma D, et al. Plant Physiol. 1994 Sep;106(1):1-6. doi: 10.1104/pp.106.1.1. Plant Physiol. 1994. PMID: 12232299 Free PMC article. No abstract available.
• Generation of expressed sequence tags of random root cDNA clones of Brassica napus by single-run partial sequencing.
  Park YS, Kwak JM, Kwon OY, Kim YS, Lee DS, Cho MJ, Lee HH, Nam HG. Park YS, et al. Plant Physiol. 1993 Oct;103(2):359-70. doi: 10.1104/pp.103.2.359. Plant Physiol. 1993. PMID: 8029332 Free PMC article.
• Deep sequencing reveals mutagenic effects of ribavirin during monotherapy of hepatitis C virus genotype 1-infected patients.
  Dietz J, Schelhorn SE, Fitting D, Mihm U, Susser S, Welker MW, Füller C, Däumer M, Teuber G, Wedemeyer H, Berg T, Lengauer T, Zeuzem S, Herrmann E, Sarrazin C. Dietz J, et al. J Virol. 2013 Jun;87(11):6172-81. doi: 10.1128/JVI.02778-12. Epub 2013 Mar 27. J Virol. 2013. PMID: 23536652 Free PMC article. Clinical Trial.

References

1. 1. J Cell Biol. 1984 Feb;98(2):558-64 - PubMed
2. 1. Science. 1991 Jun 21;252(5013):1651-6 - PubMed
3. 1. Nucleic Acids Res. 1991 Nov 25;19(22):6123-7 - PubMed
4. 1. Nature. 1992 Feb 13;355(6361):632-4 - PubMed
5. 1. Nat Genet. 1992 Aug;1(5):348-53 - PubMed

Publication types

MeSH terms

Substances

LinkOut - more resources

• Full Text Sources

  • PubMed Central
  • Silverchair Information Systems

• Other Literature Sources

  • The Lens - Patent Citations Database

• Research Materials

  • NCI CPTC Antibody Characterization Program