The SWISS-PROT protein sequence data bank and its new supplement TREMBL - PubMed (original) (raw)
The SWISS-PROT protein sequence data bank and its new supplement TREMBL
A Bairoch et al. Nucleic Acids Res. 1996.
Abstract
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc), a minimal level of redundancy and a high level of integration with other databases. Recent developments of the database include: an increase in the number and scope of model organisms; cross-references to seven additional databases; a variety of new documentation files; the creation of TREMBL, and unannotated supplement to SWISS-PROT. This supplement consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDS) in the EMBL nucleotide sequence database, except CDS already included in SWISS-PROT.
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References
- J Biotechnol. 1994 Jun 30;35(2-3):273-80 - PubMed
- Trends Biochem Sci. 1994 Jun;19(6):258-60 - PubMed
- Nucleic Acids Res. 1994 Sep;22(17):3445-9 - PubMed
- Electrophoresis. 1995 Jul;16(7):1170-4 - PubMed
- Nucleic Acids Res. 1994 Sep;22(17):3578-80 - PubMed
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