Snapshot of an enzyme reaction intermediate in the structure of the ATP-Mg2+-oxalate ternary complex of Escherichia coli PEP carboxykinase - PubMed (original) (raw)
Snapshot of an enzyme reaction intermediate in the structure of the ATP-Mg2+-oxalate ternary complex of Escherichia coli PEP carboxykinase
L W Tari et al. Nat Struct Biol. 1996 Apr.
Abstract
We report the 1.8 A crystal structure of adenosine triphosphate (ATP)-magnesium-oxalate bound phosphoenolpyruvate carboxykinase (PCK) from Escherichia coli. ATP binding induces a 20 degree hinge-like rotation of the N- and C-terminal domains which closes the active-site cleft. PCK possesses a novel nucleotide-binding fold, particularly in the adenine-binding region, where the formation of a cis backbone torsion angle in a loop glycine residue promotes intimate contacts between the adenine-binding loop and adenine, while stabilizing a syn conformation of the base. This complex represents a reaction intermediate analogue along the pathway of the conversion of oxaloacetate to phosphoenolpyruvate, and provides insight into the mechanistic details of the chemical reaction catalysed by this enzyme.
Comment in
- Familiar jaws with new twists.
Pai EF. Pai EF. Nat Struct Biol. 1996 Apr;3(4):307-9. doi: 10.1038/nsb0496-307. Nat Struct Biol. 1996. PMID: 8599751 No abstract available.
Similar articles
- Crystal structure of Escherichia coli phosphoenolpyruvate carboxykinase: a new structural family with the P-loop nucleoside triphosphate hydrolase fold.
Matte A, Goldie H, Sweet RM, Delbaere LT. Matte A, et al. J Mol Biol. 1996 Feb 16;256(1):126-43. doi: 10.1006/jmbi.1996.0072. J Mol Biol. 1996. PMID: 8609605 - Familiar jaws with new twists.
Pai EF. Pai EF. Nat Struct Biol. 1996 Apr;3(4):307-9. doi: 10.1038/nsb0496-307. Nat Struct Biol. 1996. PMID: 8599751 No abstract available. - Structure/function studies of phosphoryl transfer by phosphoenolpyruvate carboxykinase.
Delbaere LT, Sudom AM, Prasad L, Leduc Y, Goldie H. Delbaere LT, et al. Biochim Biophys Acta. 2004 Mar 11;1697(1-2):271-8. doi: 10.1016/j.bbapap.2003.11.030. Biochim Biophys Acta. 2004. PMID: 15023367 Review. - Structure and mechanism of phosphoenolpyruvate carboxykinase.
Matte A, Tari LW, Goldie H, Delbaere LT. Matte A, et al. J Biol Chem. 1997 Mar 28;272(13):8105-8. doi: 10.1074/jbc.272.13.8105. J Biol Chem. 1997. PMID: 9139042 Review. No abstract available. - Crystal structure of Anaerobiospirillum succiniciproducens PEP carboxykinase reveals an important active site loop.
Cotelesage JJ, Prasad L, Zeikus JG, Laivenieks M, Delbaere LT. Cotelesage JJ, et al. Int J Biochem Cell Biol. 2005 Sep;37(9):1829-37. doi: 10.1016/j.biocel.2005.03.008. Int J Biochem Cell Biol. 2005. PMID: 15890557
Cited by
- Structural comparisons of phosphoenolpyruvate carboxykinases reveal the evolutionary trajectories of these phosphodiester energy conversion enzymes.
Chiba Y, Miyakawa T, Shimane Y, Takai K, Tanokura M, Nozaki T. Chiba Y, et al. J Biol Chem. 2019 Dec 13;294(50):19269-19278. doi: 10.1074/jbc.RA119.010920. Epub 2019 Oct 28. J Biol Chem. 2019. PMID: 31662435 Free PMC article. - Links from genome proteins to known 3-D structures.
Wang Y, Bryant S, Tatusov R, Tatusova T. Wang Y, et al. Genome Res. 2000 Oct;10(10):1643-7. doi: 10.1101/gr.143200. Genome Res. 2000. PMID: 11042161 Free PMC article. - Mechanisms of activation of phosphoenolpyruvate carboxykinase from Escherichia coli by Ca2+ and of desensitization by trypsin.
Sudom A, Walters R, Pastushok L, Goldie D, Prasad L, Delbaere LT, Goldie H. Sudom A, et al. J Bacteriol. 2003 Jul;185(14):4233-42. doi: 10.1128/JB.185.14.4233-4242.2003. J Bacteriol. 2003. PMID: 12837799 Free PMC article. - Cloning, sequencing, and overexpression of the Anaerobiospirillum succiniciproducens phosphoenolpyruvate carboxykinase (pckA) gene.
Laivenieks M, Vieille C, Zeikus JG. Laivenieks M, et al. Appl Environ Microbiol. 1997 Jun;63(6):2273-80. doi: 10.1128/aem.63.6.2273-2280.1997. Appl Environ Microbiol. 1997. PMID: 9172347 Free PMC article. - HPr kinase/phosphorylase, the sensor enzyme of catabolite repression in Gram-positive bacteria: structural aspects of the enzyme and the complex with its protein substrate.
Nessler S, Fieulaine S, Poncet S, Galinier A, Deutscher J, Janin J. Nessler S, et al. J Bacteriol. 2003 Jul;185(14):4003-10. doi: 10.1128/JB.185.14.4003-4010.2003. J Bacteriol. 2003. PMID: 12837773 Free PMC article. No abstract available.
Publication types
MeSH terms
Substances
LinkOut - more resources
Molecular Biology Databases
Miscellaneous