Sequence analysis of an 81 kb contig from Arabidopsis thaliana chromosome III - PubMed (original) (raw)

Sequence analysis of an 81 kb contig from Arabidopsis thaliana chromosome III

F Quigley et al. Nucleic Acids Res. 1996.

Abstract

The nucleotide sequence of a 81 493 bp contig from Arabidopsis thaliana chromosome III has been determined together with 11 corresponding cognate cDNAs. Analysis of the finished sequence and comparison with public databases indicates a gene density of one gene per 4527 bp and identifies 17 novel genes, 10 of which are totally unknown or have no well-defined function. In addition, the contig contains part of a non-LTR retrotransposon and large direct and inverted repeats. Contig analysis also provides information on the structure and genomic organization of plant genes.

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References

1. 1. Nucleic Acids Res. 1996 Jan 15;24(2):316-20 - PubMed
2. 1. Proc Natl Acad Sci U S A. 1993 Sep 15;90(18):8692-6 - PubMed
3. 1. Science. 1995 Jul 28;269(5223):496-512 - PubMed
4. 1. Mol Gen Genet. 1994 Nov 1;245(3):390-6 - PubMed
5. 1. Plant Mol Biol. 1994 Oct;26(1):165-73 - PubMed

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