DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences - PubMed (original) (raw)
DNA regions flanking the major Arabidopsis thaliana satellite are principally enriched in Athila retroelement sequences
T Pélissier et al. Genetica. 1996 Mar.
Abstract
An analysis of Arabidopsis thaliana heterochromatic regions revealed that genomic sequences immediately flanking the major 180 bp satellite are essentially made of middle repetitive sequences and that most of these sequences correspond to defective Athila retroelements. Using YAC and lambda clones, we evaluated the distribution of Athila elements in the Arabidopsis genome and showed that, despite the presence of numerous euchromatic copies, these elements are especially concentrated in or near heterochromatic regions. Sequencing of the various DNA transitions between satellite and Athila repeats provides strong evidence that most of the heterochromatic elements retrotransposed directly into 180 bp satellite clusters.
Similar articles
- Tandemly repeated DNA sequences and centromeric chromosomal regions of Arabidopsis species.
Heslop-Harrison JS, Brandes A, Schwarzacher T. Heslop-Harrison JS, et al. Chromosome Res. 2003;11(3):241-53. doi: 10.1023/a:1022998709969. Chromosome Res. 2003. PMID: 12769291 Review. - Athila, a new retroelement from Arabidopsis thaliana.
Pélissier T, Tutois S, Deragon JM, Tourmente S, Genestier S, Picard G. Pélissier T, et al. Plant Mol Biol. 1995 Nov;29(3):441-52. doi: 10.1007/BF00020976. Plant Mol Biol. 1995. PMID: 8534844 - Multiple repetitive DNA sequences in the paracentromeric regions of Arabidopsis thaliana L.
Brandes A, Thompson H, Dean C, Heslop-Harrison JS. Brandes A, et al. Chromosome Res. 1997 Jun;5(4):238-46. doi: 10.1023/a:1018415502795. Chromosome Res. 1997. PMID: 9244451 - Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae.
Peterson-Burch BD, Nettleton D, Voytas DF. Peterson-Burch BD, et al. Genome Biol. 2004;5(10):R78. doi: 10.1186/gb-2004-5-10-r78. Epub 2004 Sep 29. Genome Biol. 2004. PMID: 15461796 Free PMC article. - Structural and functional liaisons between transposable elements and satellite DNAs.
Meštrović N, Mravinac B, Pavlek M, Vojvoda-Zeljko T, Šatović E, Plohl M. Meštrović N, et al. Chromosome Res. 2015 Sep;23(3):583-96. doi: 10.1007/s10577-015-9483-7. Chromosome Res. 2015. PMID: 26293606 Review.
Cited by
- P-elements strengthen reproductive isolation within the Drosophila simulans species complex.
Serrato-Capuchina A, D'Agostino ERR, Peede D, Roy B, Isbell K, Wang J, Matute DR. Serrato-Capuchina A, et al. Evolution. 2021 Oct;75(10):2425-2440. doi: 10.1111/evo.14319. Epub 2021 Sep 1. Evolution. 2021. PMID: 34463356 Free PMC article. - Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome.
Pereira V. Pereira V. Genome Biol. 2004;5(10):R79. doi: 10.1186/gb-2004-5-10-r79. Epub 2004 Sep 29. Genome Biol. 2004. PMID: 15461797 Free PMC article. - Chromosome-specific molecular organization of maize (Zea mays L.) centromeric regions.
Ananiev EV, Phillips RL, Rines HW. Ananiev EV, et al. Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):13073-8. doi: 10.1073/pnas.95.22.13073. Proc Natl Acad Sci U S A. 1998. PMID: 9789043 Free PMC article. - Structural and transcriptional comparative analysis of the S locus regions in two self-incompatible Brassica napus lines.
Cui Y, Brugière N, Jackman L, Bi YM, Rothstein SJ. Cui Y, et al. Plant Cell. 1999 Nov;11(11):2217-31. doi: 10.1105/tpc.11.11.2217. Plant Cell. 1999. PMID: 10559445 Free PMC article. - Tandemly repeated DNA sequences and centromeric chromosomal regions of Arabidopsis species.
Heslop-Harrison JS, Brandes A, Schwarzacher T. Heslop-Harrison JS, et al. Chromosome Res. 2003;11(3):241-53. doi: 10.1023/a:1022998709969. Chromosome Res. 2003. PMID: 12769291 Review.
References
- Chromosoma. 1989 Aug;98(2):117-22 - PubMed
- Nucleic Acids Res. 1990 Jul 11;18(13):4011 - PubMed
- Annu Rev Genet. 1992;26:239-75 - PubMed
- Plant Physiol. 1987 Dec;85(4):1110-7 - PubMed
- Proc Natl Acad Sci U S A. 1995 Apr 25;92(9):3804-8 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Other Literature Sources