CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues - PubMed (original) (raw)
CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues
M Bellorini et al. Nucleic Acids Res. 1997.
Abstract
Both the TATA and CCAAT boxes are widespread promoter elements and their binding proteins, TBP and NF-Y, are extremely conserved in evolution. NF-Y is composed of three subunits, NF-YA, NF-YB and NF-YC, all necessary for DNA binding. NF-YB and NF-YC contain a putative histone-like motif, a domain also present in TBP-associated factors (TAFIIs) and in the subunits of the transcriptional repressor NC2. Immunopurification of holo-TFIID with anti-TBP and anti-TAFII100 antibodies indicates that a fraction of NF-YB associates with TFIID in the absence of NF-YA. Sedimentation velocity centrifugation experiments confirm that two pools of NF-YB, and most likely NF-YC, exist: one associated with NF-YA and binding to the CCAAT box; another involved in high molecular weight complexes. We started to dissect NF-Y-TFIID interactions by showing that: (i) NF-YB and NF-YC interact with TBP in solution, both separately and once bound to each other; (ii) short stretches of both NF-YB and NF-YC located within the evolutionary conserved domains, adjacent to the putative histone fold motifs, are necessary for TBP binding; (iii) TBP single amino acid mutants in the HS2 helix, previously shown to be defective in NC2 binding, are also unable to bind NF-YB and NF-YC.
Similar articles
- NF-Y histone fold alpha1 helices help impart CCAAT specificity.
Zemzoumi K, Frontini M, Bellorini M, Mantovani R. Zemzoumi K, et al. J Mol Biol. 1999 Feb 19;286(2):327-37. doi: 10.1006/jmbi.1998.2496. J Mol Biol. 1999. PMID: 9973554 - NF-Y recruitment of TFIID, multiple interactions with histone fold TAF(II)s.
Frontini M, Imbriano C, diSilvio A, Bell B, Bogni A, Romier C, Moras D, Tora L, Davidson I, Mantovani R. Frontini M, et al. J Biol Chem. 2002 Feb 22;277(8):5841-8. doi: 10.1074/jbc.M103651200. Epub 2001 Oct 31. J Biol Chem. 2002. PMID: 11689552 - Cloning and characterization of the histone-fold proteins YBL1 and YCL1.
Bolognese F, Imbriano C, Caretti G, Mantovani R. Bolognese F, et al. Nucleic Acids Res. 2000 Oct 1;28(19):3830-8. doi: 10.1093/nar/28.19.3830. Nucleic Acids Res. 2000. PMID: 11000277 Free PMC article. - Structural determinants for NF-Y/DNA interaction at the CCAAT box.
Nardone V, Chaves-Sanjuan A, Nardini M. Nardone V, et al. Biochim Biophys Acta Gene Regul Mech. 2017 May;1860(5):571-580. doi: 10.1016/j.bbagrm.2016.09.006. Epub 2016 Sep 25. Biochim Biophys Acta Gene Regul Mech. 2017. PMID: 27677949 Review. - Mechanisms of transcriptional activation and repression can both involve TFIID.
Manley JL, Um M, Li C, Ashali H. Manley JL, et al. Philos Trans R Soc Lond B Biol Sci. 1996 Apr 29;351(1339):517-26. doi: 10.1098/rstb.1996.0050. Philos Trans R Soc Lond B Biol Sci. 1996. PMID: 8735274 Review.
Cited by
- NF-Y behaves as a bifunctional transcription factor that can stimulate or repress the FGF-4 promoter in an enhancer-dependent manner.
Bernadt CT, Nowling T, Wiebe MS, Rizzino A. Bernadt CT, et al. Gene Expr. 2005;12(3):193-212. doi: 10.3727/000000005783992052. Gene Expr. 2005. PMID: 16128003 Free PMC article. - Genome-wide identification and expression analysis of the NF-Y family of transcription factors in Triticum aestivum.
Stephenson TJ, McIntyre CL, Collet C, Xue GP. Stephenson TJ, et al. Plant Mol Biol. 2007 Sep;65(1-2):77-92. doi: 10.1007/s11103-007-9200-9. Epub 2007 Jun 28. Plant Mol Biol. 2007. PMID: 17598077 - Regulation of the p53 transcriptional response by structurally diverse core promoters.
Morachis JM, Murawsky CM, Emerson BM. Morachis JM, et al. Genes Dev. 2010 Jan 15;24(2):135-47. doi: 10.1101/gad.1856710. Epub 2009 Dec 29. Genes Dev. 2010. PMID: 20040571 Free PMC article. - Developmentally specific role of the CCAAT box in regulation of human gamma-globin gene expression.
Fang X, Han H, Stamatoyannopoulos G, Li Q. Fang X, et al. J Biol Chem. 2004 Feb 13;279(7):5444-9. doi: 10.1074/jbc.M306241200. Epub 2003 Nov 26. J Biol Chem. 2004. PMID: 14645237 Free PMC article. - Transcriptional regulation of the human neutral ceramidase gene.
O'Neill SM, Yun JK, Fox TE, Kester M. O'Neill SM, et al. Arch Biochem Biophys. 2011 Jul;511(1-2):21-30. doi: 10.1016/j.abb.2011.04.012. Epub 2011 Apr 22. Arch Biochem Biophys. 2011. PMID: 21531200 Free PMC article.
References
- Nucleic Acids Res. 1995 Jul 25;23(14):2685-91 - PubMed
- Cell. 1992 Aug 7;70(3):477-89 - PubMed
- J Biol Chem. 1995 Sep 8;270(36):20978-86 - PubMed
- EMBO J. 1995 Sep 1;14(17):4318-28 - PubMed
- J Biol Chem. 1995 Oct 20;270(42):25014-9 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources