Three-dimensional domain duplication, swapping and stealing - PubMed (original) (raw)
Review
Three-dimensional domain duplication, swapping and stealing
J Heringa et al. Curr Opin Struct Biol. 1997 Jun.
Abstract
Examination of multidomain and/or multimeric protein structures can reveal evolutionary paths to a more complex 3D organization. Over the past few years, proteins have been shown to evolve while preserving mutual domain organization and interfaces. The recent advances in understanding domain reorganization and mobility highlight the versatility and efficiency of protein structural evolution.
Similar articles
- 3D domain swapping: as domains continue to swap.
Liu Y, Eisenberg D. Liu Y, et al. Protein Sci. 2002 Jun;11(6):1285-99. doi: 10.1110/ps.0201402. Protein Sci. 2002. PMID: 12021428 Free PMC article. Review. - Structural features and evolution of protein-protein interactions.
Von Eichborn J, Günther S, Preissner R. Von Eichborn J, et al. Genome Inform. 2010 Jan;22:1-10. Genome Inform. 2010. PMID: 20238414 - Protein families and their evolution-a structural perspective.
Orengo CA, Thornton JM. Orengo CA, et al. Annu Rev Biochem. 2005;74:867-900. doi: 10.1146/annurev.biochem.74.082803.133029. Annu Rev Biochem. 2005. PMID: 15954844 Review. - Supra-domains: evolutionary units larger than single protein domains.
Vogel C, Berzuini C, Bashton M, Gough J, Teichmann SA. Vogel C, et al. J Mol Biol. 2004 Feb 20;336(3):809-23. doi: 10.1016/j.jmb.2003.12.026. J Mol Biol. 2004. PMID: 15095989 - Accurate prediction of interfacial residues in two-domain proteins using evolutionary information: implications for three-dimensional modeling.
Bhaskara RM, Padhi A, Srinivasan N. Bhaskara RM, et al. Proteins. 2014 Jul;82(7):1219-34. doi: 10.1002/prot.24486. Epub 2013 Dec 6. Proteins. 2014. PMID: 24375512
Cited by
- Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome.
Shameer K, Sowdhamini R. Shameer K, et al. J Clin Bioinforma. 2012 Apr 3;2(1):8. doi: 10.1186/2043-9113-2-8. J Clin Bioinforma. 2012. PMID: 22472218 Free PMC article. - X-ray structure analysis of a designed oligomeric miniprotein reveals a discrete quaternary architecture.
Ali MH, Peisach E, Allen KN, Imperiali B. Ali MH, et al. Proc Natl Acad Sci U S A. 2004 Aug 17;101(33):12183-8. doi: 10.1073/pnas.0401245101. Epub 2004 Aug 9. Proc Natl Acad Sci U S A. 2004. PMID: 15302930 Free PMC article. - Abundance, composition and distribution of simple sequence repeats and dinucleotide compositional bias within WSSV genomes.
Shekar M, Karunasagar I, Karunasagar I. Shekar M, et al. J Genet. 2007 Apr;86(1):69-73. doi: 10.1007/s12041-007-0010-2. J Genet. 2007. PMID: 17656852 No abstract available. - Circular permutation of betaB2-crystallin changes the hierarchy of domain assembly.
Wright G, Basak AK, Wieligmann K, Mayr EM, Slingsby C. Wright G, et al. Protein Sci. 1998 Jun;7(6):1280-5. doi: 10.1002/pro.5560070602. Protein Sci. 1998. PMID: 9655330 Free PMC article. - 3D domain swapping: as domains continue to swap.
Liu Y, Eisenberg D. Liu Y, et al. Protein Sci. 2002 Jun;11(6):1285-99. doi: 10.1110/ps.0201402. Protein Sci. 2002. PMID: 12021428 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Miscellaneous