The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively - PubMed (original) (raw)
The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively
H Y Liu et al. EMBO J. 1998.
Abstract
The CCR4 transcriptional regulatory complex consisting of CCR4, CAF1, DBF2 and other unidentified factors is one of several groups of proteins that affect gene expression. Using mass spectrometry, we have identified the 195, 185 and 116 kDa species which are part of the CCR4 complex. The 195 and 185 kDa proteins were found to be NOT1 and the 116 kDa species was identical to NOT3. NOT1, 2, 3 and 4 proteins are part of a regulatory complex that negatively affects transcription. All four NOT proteins were found to co-immunoprecipitate with CCR4 and CAF1, and NOT1 co-purified with CCR4 and CAF1 through three chromatographic steps in a complex estimated to be 1.2x10(6) Da in size. Mutations in the NOT genes affected many of the same genes and processes that are affected by defects in the CCR4 complex components, including reduction in ADH2 derepression, defective cell wall integrity and increased sensitivity to monoand divalent ions. Similarly, ccr4, caf1 and dbf2 alleles negatively regulated FUS1-lacZ expression, as do defects in the NOT genes. These results indicate that the NOT proteins are physically and functionally part of the CCR4 complex which forms a unique and novel complex that affects transcription both positively and negatively.
Similar articles
- The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5.
Bai Y, Salvadore C, Chiang YC, Collart MA, Liu HY, Denis CL. Bai Y, et al. Mol Cell Biol. 1999 Oct;19(10):6642-51. doi: 10.1128/MCB.19.10.6642. Mol Cell Biol. 1999. PMID: 10490603 Free PMC article. - DBF2, a cell cycle-regulated protein kinase, is physically and functionally associated with the CCR4 transcriptional regulatory complex.
Liu HY, Toyn JH, Chiang YC, Draper MP, Johnston LH, Denis CL. Liu HY, et al. EMBO J. 1997 Sep 1;16(17):5289-98. doi: 10.1093/emboj/16.17.5289. EMBO J. 1997. PMID: 9311989 Free PMC article. - Characterization of CAF4 and CAF16 reveals a functional connection between the CCR4-NOT complex and a subset of SRB proteins of the RNA polymerase II holoenzyme.
Liu HY, Chiang YC, Pan J, Chen J, Salvadore C, Audino DC, Badarinarayana V, Palaniswamy V, Anderson B, Denis CL. Liu HY, et al. J Biol Chem. 2001 Mar 9;276(10):7541-8. doi: 10.1074/jbc.M009112200. Epub 2000 Dec 11. J Biol Chem. 2001. PMID: 11113136 - Ccr4-Not is at the core of the eukaryotic gene expression circuitry.
Villanyi Z, Collart MA. Villanyi Z, et al. Biochem Soc Trans. 2015 Dec;43(6):1253-8. doi: 10.1042/BST20150167. Biochem Soc Trans. 2015. PMID: 26614669 Review. - Global control of gene expression in yeast by the Ccr4-Not complex.
Collart MA. Collart MA. Gene. 2003 Aug 14;313:1-16. doi: 10.1016/s0378-1119(03)00672-3. Gene. 2003. PMID: 12957374 Review.
Cited by
- The CCR4-NOT complex suppresses untimely translational activation of maternal mRNAs.
Soeda S, Oyama M, Kozuka-Hata H, Yamamoto T. Soeda S, et al. Development. 2023 Nov 1;150(21):dev201773. doi: 10.1242/dev.201773. Epub 2023 Oct 18. Development. 2023. PMID: 37767629 Free PMC article. - SPT5 affects the rate of mRNA degradation and physically interacts with CCR4 but does not control mRNA deadenylation.
Cui Y, Chiang YC, Viswanathan P, Lee DJ, Denis CL. Cui Y, et al. Am J Mol Biol. 2012 Jan;2(1):11-20. doi: 10.4236/ajmb.2012.21002. Am J Mol Biol. 2012. PMID: 36910576 Free PMC article. - Ultrasensitive Ribo-seq reveals translational landscapes during mammalian oocyte-to-embryo transition and pre-implantation development.
Xiong Z, Xu K, Lin Z, Kong F, Wang Q, Quan Y, Sha QQ, Li F, Zou Z, Liu L, Ji S, Chen Y, Zhang H, Fang J, Yu G, Liu B, Wang L, Wang H, Deng H, Yang X, Fan HY, Li L, Xie W. Xiong Z, et al. Nat Cell Biol. 2022 Jun;24(6):968-980. doi: 10.1038/s41556-022-00928-6. Epub 2022 Jun 13. Nat Cell Biol. 2022. PMID: 35697785 - Dedicated chaperones coordinate co-translational regulation of ribosomal protein production with ribosome assembly to preserve proteostasis.
Pillet B, Méndez-Godoy A, Murat G, Favre S, Stumpe M, Falquet L, Kressler D. Pillet B, et al. Elife. 2022 Mar 31;11:e74255. doi: 10.7554/eLife.74255. Elife. 2022. PMID: 35357307 Free PMC article. - Differential regulation of mRNA fate by the human Ccr4-Not complex is driven by coding sequence composition and mRNA localization.
Gillen SL, Giacomelli C, Hodge K, Zanivan S, Bushell M, Wilczynska A. Gillen SL, et al. Genome Biol. 2021 Oct 6;22(1):284. doi: 10.1186/s13059-021-02494-w. Genome Biol. 2021. PMID: 34615539 Free PMC article.
References
- Mol Cell Biol. 1994 Jul;14(7):4522-31 - PubMed
- Trends Cell Biol. 1997 Apr;7(4):139-42 - PubMed
- Anal Chem. 1994 Dec 15;66(24):4390-9 - PubMed
- Protein Expr Purif. 1996 Aug;8(1):85-90 - PubMed
- Nature. 1996 Feb 1;379(6564):466-9 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases