The PRESAGE database for structural genomics - PubMed (original) (raw)
The PRESAGE database for structural genomics
S E Brenner et al. Nucleic Acids Res. 1999.
Abstract
The PRESAGE database is a collaborative resource for structural genomics. It provides a database of proteins to which researchers add annotations indicating current experimental status, structural predictions and suggestions. The database is intended to enhance communication among structural genomics researchers and aid dissemination of their results. The PRESAGE database may be accessed at http://presage.stanford.edu/
Similar articles
- 3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes.
Fleming K, Müller A, MacCallum RM, Sternberg MJ. Fleming K, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D245-50. doi: 10.1093/nar/gkh064. Nucleic Acids Res. 2004. PMID: 14681404 Free PMC article. - Database of protein sequence alignments: PIR-ALN.
Srinivasarao GY, Yeh LS, Marzec CR, Orcutt BC, Barker WC, Pfeiffer F. Srinivasarao GY, et al. Nucleic Acids Res. 1999 Jan 1;27(1):284-5. doi: 10.1093/nar/27.1.284. Nucleic Acids Res. 1999. PMID: 9847202 Free PMC article. - SCOP: a Structural Classification of Proteins database.
Hubbard TJ, Ailey B, Brenner SE, Murzin AG, Chothia C. Hubbard TJ, et al. Nucleic Acids Res. 1999 Jan 1;27(1):254-6. doi: 10.1093/nar/27.1.254. Nucleic Acids Res. 1999. PMID: 9847194 Free PMC article. - A tour of structural genomics.
Brenner SE. Brenner SE. Nat Rev Genet. 2001 Oct;2(10):801-9. doi: 10.1038/35093574. Nat Rev Genet. 2001. PMID: 11584296 Review. - The role of protein structure in genomics.
Domingues FS, Koppensteiner WA, Sippl MJ. Domingues FS, et al. FEBS Lett. 2000 Jun 30;476(1-2):98-102. doi: 10.1016/s0014-5793(00)01678-1. FEBS Lett. 2000. PMID: 10878259 Review.
Cited by
- Sequence-based prediction of protein crystallization, purification and production propensity.
Mizianty MJ, Kurgan L. Mizianty MJ, et al. Bioinformatics. 2011 Jul 1;27(13):i24-33. doi: 10.1093/bioinformatics/btr229. Bioinformatics. 2011. PMID: 21685077 Free PMC article. - Fishing with (Proto)Net-a principled approach to protein target selection.
Linial M. Linial M. Comp Funct Genomics. 2003;4(5):542-8. doi: 10.1002/cfg.328. Comp Funct Genomics. 2003. PMID: 18629007 Free PMC article. - Genomic scale sub-family assignment of protein domains.
Gough J. Gough J. Nucleic Acids Res. 2006 Jul 28;34(13):3625-33. doi: 10.1093/nar/gkl484. Print 2006. Nucleic Acids Res. 2006. PMID: 16877569 Free PMC article. - Identification of putative domain linkers by a neural network - application to a large sequence database.
Miyazaki S, Kuroda Y, Yokoyama S. Miyazaki S, et al. BMC Bioinformatics. 2006 Jun 27;7:323. doi: 10.1186/1471-2105-7-323. BMC Bioinformatics. 2006. PMID: 16800897 Free PMC article. - Sequence-based prediction of protein domains.
Liu J, Rost B. Liu J, et al. Nucleic Acids Res. 2004 Jul 7;32(12):3522-30. doi: 10.1093/nar/gkh684. Print 2004. Nucleic Acids Res. 2004. PMID: 15240828 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources