SeqArray documentation (original) (raw)
Simulated sample data for 1000 Genomes Phase 1
Add values to a GDS File
Get Allele Frequencies or Counts
Apply Functions Over Array Margins
Data Management of Large-scale Whole-Genome Sequence Variant...
VariantAnnotation objects
Conversion between PLINK BED and SeqArray GDS
Apply Functions Over Array Margins via Blocking
Data Integrity Checking
Close the SeqArray GDS File
Delete GDS Variables
Hash function digests
Example files
Export to a GDS File
Convert to a SNP GDS File
Convert to a VCF File
Get Data
Get the Filter of GDS File
Merge Multiple SeqArray GDS Files
Missing genotype percentage
Number of alleles
Open a SeqArray GDS File
Optimize the Storage of Data Array
Apply Functions in Parallel
Setup/Get a Parallel Environment
Recompress the GDS file
Reset Variant ID in SeqArray GDS Files
Set a Filter to Sample or Variant
Set a Filter to Variant with Allele Count/Freq
Convert SNPRelate Format to SeqArray Format
Storage and Compression Options
Summarize a SeqArray GDS File
Get the parameters in the GDS system
Transpose Data Array
Apply Function Over Variant Units
Filter unit variants
Sliding units of selected variants
SeqVarGDSClass
Reformat VCF Files
Parse the Header of a VCF/BCF File
Get the Sample IDs