Get the Taxonomic tree function (original) (raw)
getTaxonomy: Get the Taxonomic tree function
Description Usage Arguments Value Examples
Description
The function to obtain the taxonomic tree from the database in the newick format that can be plugged into phylo.io for visualisation.
Usage
Arguments
| root | optional parameter, the root of the node of interest |
|---|---|
| members | optional parameter, list of member ncbi taxon or UniProt IDs that should be included in the induced taxonomy. |
| newick | optional parameter, boolean default set to TRUE |
Value
an object containing the JSON keys as attributes
Examples
OmaDB documentation built on Nov. 13, 2020, 2 a.m.