decoupleR: Ensemble of computational methods to infer biological activities from omics data (original) (raw)

Installation

decoupleR is an R package distributed as part of the Bioconductor project. To install the package, start R and enter:

Alternatively, if you find any error, try to install the latest version from GitHub:

License

Footprint methods inside decoupleR can be used for academic or commercial purposes, except viper which holds a non-commercial license.

The data redistributed by OmniPath does not have a license, each original resource carries their own. Here one can find the license information of all the resources in OmniPath.

Citation

Badia-i-Mompel P., Vélez Santiago J., Braunger J., Geiss C., Dimitrov D., Müller-Dott S., Taus P., Dugourd A., Holland C.H., Ramirez Flores R.O. and Saez-Rodriguez J. 2022. decoupleR: ensemble of computational methods to infer biological activities from omics data. Bioinformatics Advances. https://doi.org/10.1093/bioadv/vbac016