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URL: http://htslib.org/

Proper Citation: SAMTOOLS (RRID:SCR_002105)

Description: Original SAMTOOLS package has been split into three separate repositories including Samtools, BCFtools and HTSlib. Samtools for manipulating next generation sequencing data used for reading, writing, editing, indexing,viewing nucleotide alignments in SAM,BAM,CRAM format. BCFtools used for reading, writing BCF2,VCF, gVCF files and calling, filtering, summarising SNP and short indel sequence variants. HTSlib used for reading, writing high throughput sequencing data.

Abbreviations: SAMtools

Synonyms: samtools, Samtools, Sequence Alignment Map TOOLS, SAMtools, SAM tools

Resource Type: data analysis software, software toolkit, software application, sequence analysis software, software resource, data processing software

Defining Citation: PMID:19505943, PMID:21903627, DOI:10.1093/bioinformatics/btp352

Keywords: Samtools, BCFtools, HTSlib, next generation sequencing, nucleotide alignments, sequence variant, genomic, c, perl, read, alignment, nucleotide, sequence, data, process, sam, bam, cram, vcf, bcf, bio.tools

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Funding Agency: Wellcome Trust , NHGRI

Availability: Free, Available for download, Freely available

Resource Name: SAMTOOLS

Resource ID: SCR_002105

Alternate IDs: SCR_018682, biotools:samtools, OMICS_01074, nlx_154607, OMICS_00090

Alternate URLs: https://github.com/samtools/samtools, https://github.com/samtools/htslib, https://bio.tools/samtools, https://sources.debian.org/src/samtools/

Old URLs: http://samtools.sourceforge.net/

License: MIT License

Record Creation Time: 2022-01-29 12:02:11

Record Last Update: 2024-11-18 09:31:56

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