Protter: interactive protein feature visualization and integration with experimental proteomic data (original) (raw)

“…1A) are similar to known proteins or contain any described motifs. Protter analysis (19) predicted that all genes of variable region 2 (V2) (Fig. 1A) of both strains encode transmembrane proteins, with either three or four predicted membrane spanning domains per protein (Fig.…”

Section: Resultsmentioning

“…Gene ontology was investigated with FunRich v3.1.3 using the Gene Ontology Database [24,25]. The peptides identified by mass spectrometry were visualised using Protter [26] with membrane orientations as specified in UniProt annotations [27]. Data has been uploaded to EVpedia [28].…”

Section: Methodsmentioning

“…A, graphic depiction of recombinant CCL28 with cysteines highlighted. The image was generated in Protter (34). B, MS1 and MS2 spectra of the dipeptide resulting from a disulfide bridge between Cys-30 and Cys-80.…”

Section: Disulfide Bond Mapping Of Ccl28 By Mass Spectrometry-mentioning