Data formats · spaCy API Documentation (original) (raw)

Data formats

Details on spaCy's input and output data formats

This section documents input and output formats of data used by spaCy, including the training config, training data and lexical vocabulary data. For an overview of label schemes used by the models, see themodels directory. Each trained pipeline documents the label schemes used in its components, depending on the data it was trained on.

Training config v3.0

Config files define the training process and pipeline and can be passed tospacy train. They useThinc’s configuration system under the hood. For details on how to use training configs, see theusage documentation. To get started with the recommended settings for your use case, check out thequickstart widget or run theinit config command.

nlp section

Defines the nlp object, its tokenizer andprocessing pipeline component names.

Name Description
lang Pipeline language ISO code. Defaults to null. str
pipeline Names of pipeline components in order. Should correspond to sections in the [components] block, e.g. [components.ner]. See docs on defining components. Defaults to []. List[str]
disabled Names of pipeline components that are loaded but disabled by default and not run as part of the pipeline. Should correspond to components listed in pipeline. After a pipeline is loaded, disabled components can be enabled using Language.enable_pipe. List[str]
before_creation Optional callback to modify Language subclass before it’s initialized. Defaults to null. Optional[Callable[[Type[Language]], Type[Language]]]
after_creation Optional callback to modify nlp object right after it’s initialized. Defaults to null. Optional[Callable[[Language],Language]]
after_pipeline_creation Optional callback to modify nlp object after the pipeline components have been added. Defaults to null. Optional[Callable[[Language],Language]]
tokenizer The tokenizer to use. Defaults to Tokenizer. Callable[[str],Doc]
batch_size Default batch size for Language.pipe and Language.evaluate. int

components section

This section includes definitions of thepipeline components and their models, if available. Components in this section can be referenced in the pipeline of the[nlp] block. Component blocks need to specify either a factory (named function to use to create component) or a source (name of path of trained pipeline to copy components from). See the docs ondefining pipeline components for details.

paths, system variables

These sections define variables that can be referenced across the other sections as variables. For example ${paths.train} uses the value of train defined in the block [paths]. If your config includes custom registered functions that need paths, you can define them here. All config values can also beoverwritten on the CLI when you runspacy train, which is especially relevant for data paths that you don’t want to hard-code in your config file.

corpora section

This section defines a dictionary mapping of string keys to functions. Each function takes an nlp object and yields Example objects. By default, the two keys train and dev are specified and each refer to aCorpus. When pretraining, an additional pretrainsection is added that defaults to a JsonlCorpus. You can also register custom functions that return a callable.

Name Description
train Training data corpus, typically used in [training] block. Callable[[Language], Iterator[Example]]
dev Development data corpus, typically used in [training] block. Callable[[Language], Iterator[Example]]
pretrain Raw text for pretraining, typically used in [pretraining] block (if available). Callable[[Language], Iterator[Example]]
Any custom or alternative corpora. Callable[[Language], Iterator[Example]]

Alternatively, the [corpora] block can refer to one function that returns a dictionary keyed by the corpus names. This can be useful if you want to load a single corpus once and then divide it up into train and dev partitions.

Name Description
corpora A dictionary keyed by string names, mapped to corpus functions that receive the current nlp object and return an iterator of Example objects. Dict[str, Callable[[Language], Iterator[Example]]]

training section

This section defines settings and controls for the training and evaluation process that are used when you run spacy train.

Name Description
accumulate_gradient Whether to divide the batch up into substeps. Defaults to 1. int
batcher Callable that takes an iterator of Doc objects and yields batches of Docs. Defaults to batch_by_words. Callable[[Iterator[Doc], Iterator[List[Doc]]]]
before_to_disk Optional callback to modify nlp object right before it is saved to disk during and after training. Can be used to remove or reset config values or disable components. Defaults to null. Optional[Callable[[Language],Language]]
before_update v3.5 Optional callback that is invoked at the start of each training step with the nlp object and a Dict containing the following entries: step, epoch. Can be used to make deferred changes to components. Defaults to null. Optional[Callable[[Language, Dict[str, Any]], None]]
dev_corpus Dot notation of the config location defining the dev corpus. Defaults to corpora.dev. str
dropout The dropout rate. Defaults to 0.1. float
eval_frequency How often to evaluate during training (steps). Defaults to 200. int
frozen_components Pipeline component names that are “frozen” and shouldn’t be initialized or updated during training. See here for details. Defaults to []. List[str]
annotating_components v3.1 Pipeline component names that should set annotations on the predicted docs during training. See here for details. Defaults to []. List[str]
gpu_allocator Library for cupy to route GPU memory allocation to. Can be "pytorch" or "tensorflow". Defaults to variable ${system.gpu_allocator}. str
logger Callable that takes the nlp and stdout and stderr IO objects, sets up the logger, and returns two new callables to log a training step and to finalize the logger. Defaults to ConsoleLogger. Callable[[Language, IO, IO], [Tuple[Callable[[Dict[str, Any]], None], Callable[[], None]]]]
max_epochs Maximum number of epochs to train for. 0 means an unlimited number of epochs. -1 means that the train corpus should be streamed rather than loaded into memory with no shuffling within the training loop. Defaults to 0. int
max_steps Maximum number of update steps to train for. 0 means an unlimited number of steps. Defaults to 20000. int
optimizer The optimizer. The learning rate schedule and other settings can be configured as part of the optimizer. Defaults to Adam. Optimizer
patience How many steps to continue without improvement in evaluation score. 0 disables early stopping. Defaults to 1600. int
score_weights Score names shown in metrics mapped to their weight towards the final weighted score. See here for details. Defaults to {}. Dict[str, float]
seed The random seed. Defaults to variable ${system.seed}. int
train_corpus Dot notation of the config location defining the train corpus. Defaults to corpora.train. str

pretraining sectionoptional

This section is optional and defines settings and controls forlanguage model pretraining. It’s used when you run spacy pretrain.

Name Description
max_epochs Maximum number of epochs. Defaults to 1000. int
dropout The dropout rate. Defaults to 0.2. float
n_save_every Saving frequency. Defaults to null. Optional[int]
objective The pretraining objective. Defaults to {"type": "characters", "n_characters": 4}. Dict[str, Any]
optimizer The optimizer. The learning rate schedule and other settings can be configured as part of the optimizer. Defaults to Adam. Optimizer
corpus Dot notation of the config location defining the corpus with raw text. Defaults to corpora.pretrain. str
batcher Callable that takes an iterator of Doc objects and yields batches of Docs. Defaults to batch_by_words. Callable[[Iterator[Doc], Iterator[List[Doc]]]]
component Component name to identify the layer with the model to pretrain. Defaults to "tok2vec". str
layer The specific layer of the model to pretrain. If empty, the whole model will be used. str

initialize section

This config block lets you define resources for initializing the pipeline. It’s used by Language.initialize and typically called right before training (but not at runtime). The section allows you to specify local file paths or custom functions to load data resources from, without requiring them at runtime when you load the trained pipeline back in. Also see the usage guides on theconfig lifecycle andcustom initialization.

Name Description
after_init Optional callback to modify the nlp object after initialization. Optional[Callable[[Language],Language]]
before_init Optional callback to modify the nlp object before initialization. Optional[Callable[[Language],Language]]
components Additional arguments passed to the initialize method of a pipeline component, keyed by component name. If type annotations are available on the method, the config will be validated against them. The initialize methods will always receive the get_examples callback and the current nlp object. Dict[str, Dict[str, Any]]
init_tok2vec Optional path to pretrained tok2vec weights created with spacy pretrain. Defaults to variable ${paths.init_tok2vec}. Ignored when actually running pretraining, as you’re creating the file to be used later. Optional[str]
lookups Additional lexeme and vocab data from spacy-lookups-data. Defaults to null. Optional[Lookups]
tokenizer Additional arguments passed to the initialize method of the specified tokenizer. Can be used for languages like Chinese that depend on dictionaries or trained models for tokenization. If type annotations are available on the method, the config will be validated against them. The initialize method will always receive the get_examples callback and the current nlp object. Dict[str, Any]
vectors Name or path of pipeline containing pretrained word vectors to use, e.g. created with init vectors. Defaults to null. Optional[str]
vocab_data Path to JSONL-formatted vocabulary file to initialize vocabulary. Optional[str]

Training data

Binary training format v3.0

The main data format used in spaCy v3.0 is a binary format created by serializing a DocBin, which represents a collection of Docobjects. This means that you can train spaCy pipelines using the same format it outputs: annotated Doc objects. The binary format is extremely efficient in storage, especially when packing multiple documents together.

Typically, the extension for these binary files is .spacy, and they are used as input format for specifying a training corpus and for spaCy’s CLI train command. The built-inconvert command helps you convert spaCy’s previousJSON format to the new binary format. It also supports conversion of the .conllu format used by theUniversal Dependencies corpora.

Note that while this is the format used to save training data, you do not have to understand the internal details to use it or create training data. See the section on preparing training data.

JSON training format deprecated

Example structure

``

Here’s an example of dependencies, part-of-speech tags and named entities, taken from the English Wall Street Journal portion of the Penn Treebank:

Annotation format for creating training examples

An Example object holds the information for one training instance. It stores two Doc objects: one for holding the gold-standard reference data, and one for holding the predictions of the pipeline. Examples can be created using theExample.from_dict method with a reference Doc and a dictionary of gold-standard annotations.

Name Description
text Raw text. str
words List of gold-standard tokens. List[str]
lemmas List of lemmas. List[str]
spaces List of boolean values indicating whether the corresponding tokens is followed by a space or not. List[bool]
tags List of fine-grained POS tags. List[str]
pos List of coarse-grained POS tags. List[str]
morphs List of morphological features. List[str]
sent_starts List of boolean values indicating whether each token is the first of a sentence or not. List[bool]
deps List of string values indicating the dependency relation of a token to its head. List[str]
heads List of integer values indicating the dependency head of each token, referring to the absolute index of each token in the text. List[int]
entities Option 1: List of BILUO tags per token of the format "{action}-{label}", or None for unannotated tokens. List[str]
entities Option 2: List of (start_char, end_char, label) tuples defining all entities in the text. List[Tuple[int, int, str]]
cats Dictionary of label/value pairs indicating how relevant a certain text category is for the text. Dict[str, float]
links Dictionary of offset/dict pairs defining named entity links. The character offsets are linked to a dictionary of relevant knowledge base IDs. Dict[Tuple[int, int], Dict]
spans Dictionary of spans_key/List[Tuple] pairs defining the spans for each spans key as (start_char, end_char, label, kb_id) tuples. Dict[str, List[Tuple[int, int, str, str]]

Examples

``

Lexical data for vocabulary

This data file can be provided via the vocab_data setting in the[initialize] block of the training config to pre-define the lexical data to initialize the nlp object’s vocabulary with. The file should contain one lexical entry per line. The first line defines the language and vocabulary settings. All other lines are expected to be JSON objects describing an individual lexeme. The lexical attributes will be then set as attributes on spaCy’s Lexeme object.

First line

``

Entry structure

``

Here’s an example of the 20 most frequent lexemes in the English training data:

The pipeline meta is available as the file meta.json and exported automatically when you save an nlp object to disk. Its contents are available as nlp.meta.

Name Description
lang Pipeline language ISO code. Defaults to "en". str
name Pipeline name, e.g. "core_web_sm". The final package name will be {lang}_{name}. Defaults to "pipeline". str
version Pipeline version. Will be used to version a Python package created with spacy package. Defaults to "0.0.0". str
spacy_version spaCy version range the package is compatible with. Defaults to the spaCy version used to create the pipeline, up to next minor version, which is the default compatibility for the available trained pipelines. For instance, a pipeline trained with v3.0.0 will have the version range ">=3.0.0,<3.1.0". str
parent_package Name of the spaCy package. Typically "spacy" or "spacy_nightly". Defaults to "spacy". str
requirements Python package requirements that the pipeline depends on. Will be used for the Python package setup in spacy package. Should be a list of package names with optional version specifiers, just like you’d define them in a setup.cfg or requirements.txt. Defaults to []. List[str]
description Pipeline description. Also used for Python package. Defaults to "". str
author Pipeline author name. Also used for Python package. Defaults to "". str
email Pipeline author email. Also used for Python package. Defaults to "". str
url Pipeline author URL. Also used for Python package. Defaults to "". str
license Pipeline license. Also used for Python package. Defaults to "". str
sources Data sources used to train the pipeline. Typically a list of dicts with the keys "name", "url", "author" and "license". See here for examples. Defaults to None. Optional[List[Dict[str, str]]]
vectors Information about the word vectors included with the pipeline. Typically a dict with the keys "width", "vectors" (number of vectors), "keys" and "name". Dict[str, Any]
pipeline Names of pipeline component names, in order. Corresponds to nlp.pipe_names. Only exists for reference and is not used to create the components. This information is defined in the config.cfg. Defaults to []. List[str]
labels Label schemes of the trained pipeline components, keyed by component name. Corresponds to nlp.pipe_labels. See here for examples. Defaults to {}. Dict[str, Dict[str, List[str]]]
performance Training accuracy, added automatically by spacy train. Dictionary of score names mapped to scores. Defaults to {}. Dict[str, Union[float, Dict[str, float]]]
speed Inference speed, added automatically by spacy train. Typically a dictionary with the keys "cpu", "gpu" and "nwords" (words per second). Defaults to {}. Dict[str, Optional[Union[float, str]]]
spacy_git_version v3.0 Git commit of spacy used to create pipeline. str
other Any other custom meta information you want to add. The data is preserved in nlp.meta. Any