Dagoberto Enrique Venera-Pontón | Smithsonian Tropical Research Institute (original) (raw)
Papers by Dagoberto Enrique Venera-Pontón
Invertebrate Biology, Mar 1, 2023
Previous research focusing on pelagic gastropods in the open ocean has demonstrated that many mor... more Previous research focusing on pelagic gastropods in the open ocean has demonstrated that many morphospecies comprise multiple distinct clades or cryptic species that can be distinguished with DNA sequence data. To date, the genetic diversity of the pelagic gastropod fauna of the tropical East Pacific, especially in shallow coastal waters, remains largely unexplored. To document the diversity of pterotracheoids (formerly heteropods) from the coastal waters of the Bay of Panama, we collected, photographed and sequenced fragments of mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA for 60 atlantids, 3 carinariids and 6 pterotracheids. In addition to the COI barcode, our results include the first published 16S sequences for these groups. We found 11 operational taxonomic units (OTUs): 9 in the genus Atlanta, 1 Carinaria and 1 Firoloida. We report the presence of Atlanta oligogyra (Clades A and B), Atlanta turriculata, Atlanta lesueurii, Atlanta helicinoidea (Clade B), Atlanta plana, Atlanta echinogyra, Atlanta inflata and Atlanta frontieri through comparisons of our sequences with previously published sequences. We did not find Atlanta gaudichaudi, Atlanta inclinata, Atlanta tokiokai, Atlanta gibbosa, Atlanta peronii, or Oxygyrus inflatus, which have previously been reported from the region. Haplotype networks and estimates of ΦST illustrate how some species show population differentiation across the tropical Indo‐Pacific region, whereas others show little apparent population structure. For example, the most common haplotypes of A. inflata and of A. turriculata occur in the Indian Ocean, the Central and West Pacific and the tropical East Pacific, whereas individuals of A. frontieri from the Indian Ocean do not share haplotypes with individuals of A. frontieri from the Pacific Ocean. Analyses were limited by sample sizes, but these data suggest that population genetics approaches may be useful for reconstructing population histories of these important, but overlooked, components of the plankton.
Journal of oceanography and marine research, 2019
The mesophotic macroalgal communities offshore Louisiana, NW Gulf of Mexico are exceptionally bio... more The mesophotic macroalgal communities offshore Louisiana, NW Gulf of Mexico are exceptionally biodiverse on hard banks located at 50-100 m depth. Despite their vulnerability to oil spills, little is known about the seasonal and spatial dynamics of these algal communities after the 2010 Deepwater Horizon oil spill (DWH). This study addresses this deficiency by compiling data on macroalgal abundances from 14 research cruises that sampled two offshore banks near the vicinity of the DWH Macondo oil well blowout. Statistical analyses revealed a strong seasonal structure in which environmental changes were followed by community changes after a month. This delayed response was linked to in situ temperatures, coinciding with various studies worldwide reporting temperature as the main predictor of seasonal structure in macroalgal communities. Additionally, this study provides evidence that the DWH may have affected the macroalgal community of Ewing Bank. Summer box dredges launched after the DWH lacked several macroalgal taxa that before the disaster were typically associated with that season; nonetheless, Summer dredges post-DWH showed a greater biodiversity due to the presence of other macroalgae. This biodiversity rise resembled a temporary response rather than a permanent outcome since the increase was statistically significant only during 2011, and seems to have progressively declined towards pre-DWH levels. Conversely, macroalgal composition seems to be progressively diverging from pre-DWH conditions. Importantly, community changes post-DWH are not necessarily caused by spilled oil but may be a consequence of other factors associated with the event.
Invertebrate Biology
The morphological diversity of marine annelid larvae is stunning. Although many of the larval for... more The morphological diversity of marine annelid larvae is stunning. Although many of the larval forms have been categorized as trochophores or modified trochophores, there are a few groups with distinctive larval features that make them easy to distinguish from other annelid larvae. We collected 252 annelid larvae from the plankton, with particular emphasis on oweniids, polygordiids, and thalassematids (i.e., echiurans) and sequenced fragments of their cytochrome c oxidase subunit 1 and 16S ribosomal RNA genes. We found six oweniid, five polygordiid, and eight thalassematid OTUs. Thalassematids were found only in samples from the Pacific, and oweniids were found only in Caribbean samples. Among the oweniids we found two distinct morphotypes, one with a narrow, cloche shape and another that had a wider and more rectangular shape with clearly developed lappets. Among the polygordiids, we identified one larva as Polygordius eschaturus and several larvae as Polygordius jenniferae. All lar...
Biology Letters
Biodiversity assessments are critical for setting conservation priorities, understanding ecosyste... more Biodiversity assessments are critical for setting conservation priorities, understanding ecosystem function and establishing a baseline to monitor change. Surveys of marine biodiversity that rely almost entirely on sampling adult organisms underestimate diversity because they tend to be limited to habitat types and individuals that can be easily surveyed. Many marine animals have planktonic larvae that can be sampled from the water column at shallow depths. This life stage often is overlooked in surveys but can be used to relatively rapidly document diversity, especially for the many species that are rare or live cryptically as adults. Using DNA barcode data from samples of nemertean worms collected in three biogeographical regions—Northeastern Pacific, the Caribbean Sea and Eastern Tropical Pacific—we found that most species were collected as either benthic adults or planktonic larvae but seldom in both stages. Randomization tests show that this deficit of operational taxonomic uni...
Invertebrate Biology, 2020
As part of a project to document the diversity of larval invertebrates on both coasts of Panama, ... more As part of a project to document the diversity of larval invertebrates on both coasts of Panama, we collected and photographed 141 larval asteroids and sequenced fragments of their mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA. We uncovered 10 Caribbean operational taxonomic units (OTUs) and five Pacific OTUs. We could identify six of the 15 OTUs based on >99% similarity with reference sequences in GenBank: The Pacific species Astropecten verrilli and Pentaceraster cumingi and the Caribbean species Astropecten marginatus, Astropecten antillensis, Oreaster reticulatus, and Mithrodia clavigera. Two other OTUs were placed in BINs in the Barcode of Life Database (BOLD) with unpublished sequences that were identified as Pharia pyramidata from the Pacific and Valvaster striatus, now known from the Caribbean as well as the Indo‐West Pacific. The remaining seven species appear likely to belong to Luidia, as 16S sequences from each have 87%–95% identity with var...
El incremento de las tasas de sedimentacion en el medio marino, producto de la deforestacion, pra... more El incremento de las tasas de sedimentacion en el medio marino, producto de la deforestacion, practicas de agricultura y uso inadecuado del suelo entre otros, ha generado preocupacion por el impacto negativo que puede tener en los arrecifes coralinos. Uno de los componentes biologicos mas importante de los arrecifes de coral son las algas bentonicas. A pesar de su importancia es muy poco lo que se conoce de los impactos de la sedimentacion en la ecologia de las algas benticas tropicales. En este estudio se examinaron los efectos de la adicion de sedimentos de diferente naturaleza en la abundancia y estructura de la comunidad de las algas arrecifales en la bahia de Chengue, Parque Nacional Natural Tayrona, Caribe colombiano. Los resultados indicaron que la adicion de sedimentos de origen terrestre, de rio y marinos, tuvieron efectos menores en la cobertura, diversidad y estructura de la comunidad de algas investigada. Los diferentes tipos de sedimentos adicionados no cambiaron de man...
The Biological Bulletin, 2020
The identity of wild cloning sea star larvae has been a mystery since they were first documented ... more The identity of wild cloning sea star larvae has been a mystery since they were first documented in the Caribbean. The most commonly collected cloning species was thought to belong to the Oreasteridae based on similarity with sequences from Oreaster reticulatus and O. clavatus. This larval form has recently been linked to a rare benthic juvenile. As part of two larger DNA barcoding projects we collected cloning asteroid larvae from the Caribbean coast of Panama and compared them to a large reference database of tropical echinoderms. Morphological and DNA barcode data from the cytochrome c oxidase subunit 1 (COI) gene demonstrated that Panamanian larvae belonged to the same operational taxonomic unit (OTU) as those recovered in previous studies of cloning larvae from the Caribbean. Much to our surprise, sequences from these larvae clearly identified them as belonging to Valvaster striatus, a species typically considered to be endemic to the Indo-West Pacific. A lineage of Mithrodia clavigera which occurs in both the Caribbean and Indo-west Pacific also has cloning larvae, suggesting that this unusual life history has allowed larvae to pass around the Cape of Good Hope and the Benguela upwelling region, which is a barrier to dispersal for most tropical marine invertebrates.
Invertebrate Biology, 2020
Surveys of larval diversity consistently increase biodiversity estimates when applied to poorly d... more Surveys of larval diversity consistently increase biodiversity estimates when applied to poorly documented groups of marine invertebrates such as phoronids and hemichordates. However, it remains to be seen how helpful this approach is for detecting unsampled species in well-studied groups. Echinoids represent a large, robust, well-studied macrofauna, with low diversity and low incidence of cryptic species, making them an ideal test case for the efficacy of larval barcoding to discover diversity in such groups. We developed a reference dataset of DNA barcodes for the shallow-water adult echinoids from both coasts of Panama and compared them to DNA sequences obtained from larvae collected primarily on the Caribbean coast of Panama. We sequenced mitochondrial cytochrome c oxidase subunit I (COI) for 43 species of adult sea urchins to expand the number and coverage of sequences available in GenBank. Sequences were successfully obtained for COI and 16S ribosomal DNA from 272 larvae and assigned to 17 operational taxonomic units (OTUs): 4 from the Pacific coast of Panama, where larvae were not sampled as intensively, and 13 from the Caribbean coast. Of these 17 OTUs, 13 were identified from comparisons with our adult sequences and belonged to species well documented in these regions. Another larva was identified from comparisons with unpublished sequences in the Barcode of Life Database (BOLD) as belonging to Pseudoboletia, a genus scarcely known in the Caribbean and previously unreported in Panama. Three OTUs remained unidentified. Based on larval morphology, at least two of these OTUs appeared to be spatangoids, which are difficult to collect and whose presence often goes undetected in standard surveys of benthic diversity. Despite its ability to capture unanticipated diversity, larval sampling failed to collect some species that are locally common along the Caribbean coast of Panama, such as Leodia sexiesperforata, Diadema antillarum, and Clypeaster rosaceus.
Invertebrate Biology, 2019
The diversity of tropical marine invertebrates is poorly documented, especially those groups for ... more The diversity of tropical marine invertebrates is poorly documented, especially those groups for which collecting adults is difficult. We collected the planktonic tornaria larvae of hemichordates (acorn worms) to assess their hidden diversity in the Neotropics. Larvae were retrieved in plankton tows from waters of the Pacific and Caribbean coasts of Panama, followed by DNA barcoding of mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA to estimate their diversity in the region. With moderate sampling efforts, we discovered six operational taxonomic units (OTUs) in the Bay of Panama on the Pacific coast, in contrast to the single species previously recorded for the entire Tropical Eastern Pacific. We found eight OTUs in Bocas del Toro province on the Caribbean coast, compared to seven species documented from adults in the entire Caribbean. All OTUs differed from each other and from named acorn worm sequences in GenBank by >10% pairwise distance in COI and >...
Frontiers in Marine Science, 2019
Studies on the population structure of common widespread macroalgae in the Gulf of Mexico (GoMx) ... more Studies on the population structure of common widespread macroalgae in the Gulf of Mexico (GoMx) are scarce, and this knowledge gap limits our understanding on how disturbances affect the genetic diversity of macroalgae in this basin. The latter is due to the lack of a baseline that can be compared with allele frequency surveys conducted after a major disturbance such as the 2010 Deepwater Horizon oil spill (DWH), which leaked 780,000 m 3 of crude oil in the vicinity of highly diverse macroalgal communities. Fortunately, quantitative assessments of the population structure pre-DWH can be accomplished for several macroalgae with dried specimens collected from research cruises conducted before 2010 in the offshore GoMx. Based on three markers (cytochrome c oxidase subunit I, COX II-III intergenic spacer, and the RuBisCO large subunit), this study reconstructed the allele frequencies pre-DWH for a GoMxwidespread macroalga, Botryocladia occidentalis, and revealed the existence of distinct populations in each of three distant regions of the GoMx: Florida Middle Grounds (FL), Campeche Banks (CB), and offshore Louisiana (LA). Population structure was assessed with exact tests of population differentiation and Analyses of Molecular Variance. FL harbored the most differentiated and genetically diverse population due to the presence and abundance of unique haplotypes. Interestingly, FL haplotypes were not closely phylogenetically related to each other and included the most divergent lineages of the entire GoMx; this phylogeographic pattern suggests a strong influence of migrants from the Caribbean on the FL population. Additionally, likelihood ratio tests with a small sample collected post-DWH indicated that the LA population underwent strong changes, showing statistically significant differences before (LA) vs. after (L2) the disaster. Whereas the LA population had affinity to CB, L2 showed a FL haplotype
Bulletin of Marine and Coastal Research, 2016
Porites colonensis is a coral from the Caribbean Sea; colonies are foliaceous, undulated, and pla... more Porites colonensis is a coral from the Caribbean Sea; colonies are foliaceous, undulated, and plate-like. Polyps are dark brown or red with small bright white or green centers; pali are present in corallites and the septal plan is bisymmetrical, conformed by three fused ventral septa, a dorsal solitary septum, and two pairs of lateral septa at each side of the dorso-ventral axis. P. colonensis is similar and can be confused with the smooth varieties of Porites astreoides and Porites branneri. There are three specimens collected from Colombia and previously identified as P. colonensis: one from Golfo de Urabá (Darién ecoregion), other from Islas del Rosario (Coralline Archipelagos ecoregion), and another from an unspecified locality, in addition to one published observation from the Golfo de Urabá without collected specimens. A recent finding of other specimens in the Tayrona National Natural Park (TNNP, Tayrona ecoregion) and the absence of a rigorous taxonomic revision for all spec...
Invertebrate Biology, 2019
Phoronid larvae, actinotrochs, are beautiful and complicated organisms which have attracted as mu... more Phoronid larvae, actinotrochs, are beautiful and complicated organisms which have attracted as much, if not more, attention than their adult forms. We collected actinotrochs from the waters of the Pacific and Caribbean coasts of Panama, and used DNA barcoding of mtCOI, as well as 16S and 18S sequences, to estimate the diversity of phoronids in the region. We discovered three operational taxonomic units (OTUs) in the Bay of Panama on the Pacific coast and four OTUs in Bocas del Toro on the Caribbean coast. Not only did all OTUs differ from each other by >10% pairwise distance in COI, but they also differed from all phoronid sequences in GenBank, including the four species for which adults have been reported for the Pacific of Panama, Phoronopsis harmeri, Phoronis psammophila, Phoronis muelleri, and Phoronis hippocrepia. In each ocean region, one common OTU was more abundant and occurred more frequently than other OTUs in our samples. The other five OTUs were relatively rare, with ...
Biodiversity Data Journal, 2019
DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used... more DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used barcode markers, 16S and COI, are not considered suitable for species identification within some "basal" phyla of metazoans. Nevertheless metabarcoding studies of bulk mixed samples commonly use these markers and may obtain sequences for "basal" phyla. We sequenced mitochondrial DNA fragments of cytochrome oxidase c subunit I (COI), 16S ribosomal RNA (16S), NADH dehydrogenase subunits 2 (16S-ND2), 6 (ND6-ND3) and 4L (ND4L-MSH) for 27 species of Caribbean octocorals to create a reference barcode dataset and to compare the utility of COI and 16S to other markers more typically used for octocorals. The most common genera (Erythropodium, Ellisella, Briareum, Plexaurella, Muriceopsis and Pterogorgia) were effectively distinguished by small differences (5 or more substitutions or indels) in COI and 16S sequences. Gorgonia and Antillogorgia were effectively distinguished fr...
Diversity, 2018
Lingulids and discinids are the only brachiopods that exhibit life histories that include a feedi... more Lingulids and discinids are the only brachiopods that exhibit life histories that include a feeding planktonic stage usually referred to as a “larva”. We collected planktotrophic brachiopod larvae from the Pacific and Caribbean coasts of Panama and took a DNA barcoding approach with mitochondrial cytochrome c oxidase subunit I (COI), mitochondrial ribosomal 16S, and nuclear ribosomal 18S genes to identify those larvae and to estimate their diversity in the region. We observed specimens from both coasts with distinct morphologies typical of lingulid and discinid larvae. COI and 16S were sequenced successfully for the lingulid larvae but failed consistently for all discinid larvae. 18S was sequenced successfully for larvae from both families. Sequence data from each gene revealed one lingulid operational taxonomic unit (OTU) from Bocas del Toro on the Caribbean coast, and one lingulid OTU from the Bay of Panama on the Pacific coast. These OTUs differed by >20% for COI, >10% for ...
Cryptogamie, Algologie, 2014
In the northwestern Gulf of Mexico, beds of rhodoliths and unconsolidated rubble at 55-70 m depth... more In the northwestern Gulf of Mexico, beds of rhodoliths and unconsolidated rubble at 55-70 m depth are associated with unique offshore deep bank habitats known as salt domes or diapirs. Prior to the 2010 BP Deepwater Horizon oil spill these harbored the highest known seaweed diversity in the northern Gulf of Mexico. Six post-spill cruises led offshore Louisiana to two sites previously documented with rich algal assemblages (i.e. prespill) revealed a dramatic post-spill die-off of seaweeds at both sites, with dredged rhodoliths appearing bleached and mostly denuded of fleshy algae, or "bare" (with a few crustose genera only, e.g. Corallinales and Peyssonneliales). This rubble, brought to the laboratory and maintained in a series of~75 liter microcosm tanks, gradually became covered by a suite of red, green and brown seaweed germlings that to this day continue to grow to adult size, reproduce, disappear and re-emerge, and whose species composition reflects pre-spill assemblages. These experiments revealed the expression of biodiversity from alternative life stages or resting stages apparently repressed in the Gulf at the time of sampling, including new, previously overlooked diversity. The rate of algal succession was documented by biweekly photography, and species taxonomic identity is being confirmed by ongoing molecular and morphological evidence. The implications of these exciting results, namely that undetected propagules, spores and endolithic filaments collected along with the "bare" substrata and in situ seawater have been triggered to germinate, grow, and reproduce under laboratory conditions are far-reaching. We hypothesize the function of rhodoliths and rubble as marine seedbanks for biological diversity and explore the role of this ecosystem for community resilience following a major anthropogenic disaster. This is a speculative paper since we currently lack many rigorous, quantitative data. The paper is envisioned as a "first step" in approaching the dynamics of rhodoliths and associated diversity following a catastrophic anthropogenic event, from which the algal and invertebrate diversity has not recovered, as of October 2013, our last collecting expedition to Ewing Bank in the NW Gulf of Mexico.
virtual.unal.edu.co
RESUMEN Se realizó un inventario de los corales pétreos que habitan en la bahía de Taganga entre ... more RESUMEN Se realizó un inventario de los corales pétreos que habitan en la bahía de Taganga entre los 0-4 m de profundidad. Se encontraron un total de 22 especies distribuidas en nueve familias, de las cuales Faviidae presentó la mayor representación de especies (diez), ...
Marine Ecology Progress Series, 2011
Inhibition of early life stages of corals by benthic algae is a critical bottleneck to the recove... more Inhibition of early life stages of corals by benthic algae is a critical bottleneck to the recovery and resilience of corals. Increasingly frequent and severe disturbances are causing large- scale coral mortality, usually followed by colonisation and dominance by benthic algae. The capacity of corals to re-establish in such algal-dominated habitats will depend on the effects of the algae on growth and survivorship of juvenile corals. We experimentally evaluated the competition between juvenile corals Porites astreoides and algae and the effects of algae on the exposure of juvenile corals to damage by parrotfishes (family Scaridae) in a Colombian Caribbean reef. We also explored whether those effects were consistent among climatic seasons (upwelling and non-upwelling). Ben- thic algae had negative and positive effects on the juvenile corals. The removal of algal turfs and fleshy macroalgae enhanced coral growth. Unexpectedly, removal of algae from around the juvenile corals increased...
Invertebrate Biology, Mar 1, 2023
Previous research focusing on pelagic gastropods in the open ocean has demonstrated that many mor... more Previous research focusing on pelagic gastropods in the open ocean has demonstrated that many morphospecies comprise multiple distinct clades or cryptic species that can be distinguished with DNA sequence data. To date, the genetic diversity of the pelagic gastropod fauna of the tropical East Pacific, especially in shallow coastal waters, remains largely unexplored. To document the diversity of pterotracheoids (formerly heteropods) from the coastal waters of the Bay of Panama, we collected, photographed and sequenced fragments of mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA for 60 atlantids, 3 carinariids and 6 pterotracheids. In addition to the COI barcode, our results include the first published 16S sequences for these groups. We found 11 operational taxonomic units (OTUs): 9 in the genus Atlanta, 1 Carinaria and 1 Firoloida. We report the presence of Atlanta oligogyra (Clades A and B), Atlanta turriculata, Atlanta lesueurii, Atlanta helicinoidea (Clade B), Atlanta plana, Atlanta echinogyra, Atlanta inflata and Atlanta frontieri through comparisons of our sequences with previously published sequences. We did not find Atlanta gaudichaudi, Atlanta inclinata, Atlanta tokiokai, Atlanta gibbosa, Atlanta peronii, or Oxygyrus inflatus, which have previously been reported from the region. Haplotype networks and estimates of ΦST illustrate how some species show population differentiation across the tropical Indo‐Pacific region, whereas others show little apparent population structure. For example, the most common haplotypes of A. inflata and of A. turriculata occur in the Indian Ocean, the Central and West Pacific and the tropical East Pacific, whereas individuals of A. frontieri from the Indian Ocean do not share haplotypes with individuals of A. frontieri from the Pacific Ocean. Analyses were limited by sample sizes, but these data suggest that population genetics approaches may be useful for reconstructing population histories of these important, but overlooked, components of the plankton.
Journal of oceanography and marine research, 2019
The mesophotic macroalgal communities offshore Louisiana, NW Gulf of Mexico are exceptionally bio... more The mesophotic macroalgal communities offshore Louisiana, NW Gulf of Mexico are exceptionally biodiverse on hard banks located at 50-100 m depth. Despite their vulnerability to oil spills, little is known about the seasonal and spatial dynamics of these algal communities after the 2010 Deepwater Horizon oil spill (DWH). This study addresses this deficiency by compiling data on macroalgal abundances from 14 research cruises that sampled two offshore banks near the vicinity of the DWH Macondo oil well blowout. Statistical analyses revealed a strong seasonal structure in which environmental changes were followed by community changes after a month. This delayed response was linked to in situ temperatures, coinciding with various studies worldwide reporting temperature as the main predictor of seasonal structure in macroalgal communities. Additionally, this study provides evidence that the DWH may have affected the macroalgal community of Ewing Bank. Summer box dredges launched after the DWH lacked several macroalgal taxa that before the disaster were typically associated with that season; nonetheless, Summer dredges post-DWH showed a greater biodiversity due to the presence of other macroalgae. This biodiversity rise resembled a temporary response rather than a permanent outcome since the increase was statistically significant only during 2011, and seems to have progressively declined towards pre-DWH levels. Conversely, macroalgal composition seems to be progressively diverging from pre-DWH conditions. Importantly, community changes post-DWH are not necessarily caused by spilled oil but may be a consequence of other factors associated with the event.
Invertebrate Biology
The morphological diversity of marine annelid larvae is stunning. Although many of the larval for... more The morphological diversity of marine annelid larvae is stunning. Although many of the larval forms have been categorized as trochophores or modified trochophores, there are a few groups with distinctive larval features that make them easy to distinguish from other annelid larvae. We collected 252 annelid larvae from the plankton, with particular emphasis on oweniids, polygordiids, and thalassematids (i.e., echiurans) and sequenced fragments of their cytochrome c oxidase subunit 1 and 16S ribosomal RNA genes. We found six oweniid, five polygordiid, and eight thalassematid OTUs. Thalassematids were found only in samples from the Pacific, and oweniids were found only in Caribbean samples. Among the oweniids we found two distinct morphotypes, one with a narrow, cloche shape and another that had a wider and more rectangular shape with clearly developed lappets. Among the polygordiids, we identified one larva as Polygordius eschaturus and several larvae as Polygordius jenniferae. All lar...
Biology Letters
Biodiversity assessments are critical for setting conservation priorities, understanding ecosyste... more Biodiversity assessments are critical for setting conservation priorities, understanding ecosystem function and establishing a baseline to monitor change. Surveys of marine biodiversity that rely almost entirely on sampling adult organisms underestimate diversity because they tend to be limited to habitat types and individuals that can be easily surveyed. Many marine animals have planktonic larvae that can be sampled from the water column at shallow depths. This life stage often is overlooked in surveys but can be used to relatively rapidly document diversity, especially for the many species that are rare or live cryptically as adults. Using DNA barcode data from samples of nemertean worms collected in three biogeographical regions—Northeastern Pacific, the Caribbean Sea and Eastern Tropical Pacific—we found that most species were collected as either benthic adults or planktonic larvae but seldom in both stages. Randomization tests show that this deficit of operational taxonomic uni...
Invertebrate Biology, 2020
As part of a project to document the diversity of larval invertebrates on both coasts of Panama, ... more As part of a project to document the diversity of larval invertebrates on both coasts of Panama, we collected and photographed 141 larval asteroids and sequenced fragments of their mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA. We uncovered 10 Caribbean operational taxonomic units (OTUs) and five Pacific OTUs. We could identify six of the 15 OTUs based on >99% similarity with reference sequences in GenBank: The Pacific species Astropecten verrilli and Pentaceraster cumingi and the Caribbean species Astropecten marginatus, Astropecten antillensis, Oreaster reticulatus, and Mithrodia clavigera. Two other OTUs were placed in BINs in the Barcode of Life Database (BOLD) with unpublished sequences that were identified as Pharia pyramidata from the Pacific and Valvaster striatus, now known from the Caribbean as well as the Indo‐West Pacific. The remaining seven species appear likely to belong to Luidia, as 16S sequences from each have 87%–95% identity with var...
El incremento de las tasas de sedimentacion en el medio marino, producto de la deforestacion, pra... more El incremento de las tasas de sedimentacion en el medio marino, producto de la deforestacion, practicas de agricultura y uso inadecuado del suelo entre otros, ha generado preocupacion por el impacto negativo que puede tener en los arrecifes coralinos. Uno de los componentes biologicos mas importante de los arrecifes de coral son las algas bentonicas. A pesar de su importancia es muy poco lo que se conoce de los impactos de la sedimentacion en la ecologia de las algas benticas tropicales. En este estudio se examinaron los efectos de la adicion de sedimentos de diferente naturaleza en la abundancia y estructura de la comunidad de las algas arrecifales en la bahia de Chengue, Parque Nacional Natural Tayrona, Caribe colombiano. Los resultados indicaron que la adicion de sedimentos de origen terrestre, de rio y marinos, tuvieron efectos menores en la cobertura, diversidad y estructura de la comunidad de algas investigada. Los diferentes tipos de sedimentos adicionados no cambiaron de man...
The Biological Bulletin, 2020
The identity of wild cloning sea star larvae has been a mystery since they were first documented ... more The identity of wild cloning sea star larvae has been a mystery since they were first documented in the Caribbean. The most commonly collected cloning species was thought to belong to the Oreasteridae based on similarity with sequences from Oreaster reticulatus and O. clavatus. This larval form has recently been linked to a rare benthic juvenile. As part of two larger DNA barcoding projects we collected cloning asteroid larvae from the Caribbean coast of Panama and compared them to a large reference database of tropical echinoderms. Morphological and DNA barcode data from the cytochrome c oxidase subunit 1 (COI) gene demonstrated that Panamanian larvae belonged to the same operational taxonomic unit (OTU) as those recovered in previous studies of cloning larvae from the Caribbean. Much to our surprise, sequences from these larvae clearly identified them as belonging to Valvaster striatus, a species typically considered to be endemic to the Indo-West Pacific. A lineage of Mithrodia clavigera which occurs in both the Caribbean and Indo-west Pacific also has cloning larvae, suggesting that this unusual life history has allowed larvae to pass around the Cape of Good Hope and the Benguela upwelling region, which is a barrier to dispersal for most tropical marine invertebrates.
Invertebrate Biology, 2020
Surveys of larval diversity consistently increase biodiversity estimates when applied to poorly d... more Surveys of larval diversity consistently increase biodiversity estimates when applied to poorly documented groups of marine invertebrates such as phoronids and hemichordates. However, it remains to be seen how helpful this approach is for detecting unsampled species in well-studied groups. Echinoids represent a large, robust, well-studied macrofauna, with low diversity and low incidence of cryptic species, making them an ideal test case for the efficacy of larval barcoding to discover diversity in such groups. We developed a reference dataset of DNA barcodes for the shallow-water adult echinoids from both coasts of Panama and compared them to DNA sequences obtained from larvae collected primarily on the Caribbean coast of Panama. We sequenced mitochondrial cytochrome c oxidase subunit I (COI) for 43 species of adult sea urchins to expand the number and coverage of sequences available in GenBank. Sequences were successfully obtained for COI and 16S ribosomal DNA from 272 larvae and assigned to 17 operational taxonomic units (OTUs): 4 from the Pacific coast of Panama, where larvae were not sampled as intensively, and 13 from the Caribbean coast. Of these 17 OTUs, 13 were identified from comparisons with our adult sequences and belonged to species well documented in these regions. Another larva was identified from comparisons with unpublished sequences in the Barcode of Life Database (BOLD) as belonging to Pseudoboletia, a genus scarcely known in the Caribbean and previously unreported in Panama. Three OTUs remained unidentified. Based on larval morphology, at least two of these OTUs appeared to be spatangoids, which are difficult to collect and whose presence often goes undetected in standard surveys of benthic diversity. Despite its ability to capture unanticipated diversity, larval sampling failed to collect some species that are locally common along the Caribbean coast of Panama, such as Leodia sexiesperforata, Diadema antillarum, and Clypeaster rosaceus.
Invertebrate Biology, 2019
The diversity of tropical marine invertebrates is poorly documented, especially those groups for ... more The diversity of tropical marine invertebrates is poorly documented, especially those groups for which collecting adults is difficult. We collected the planktonic tornaria larvae of hemichordates (acorn worms) to assess their hidden diversity in the Neotropics. Larvae were retrieved in plankton tows from waters of the Pacific and Caribbean coasts of Panama, followed by DNA barcoding of mitochondrial cytochrome c oxidase subunit I (COI) and 16S ribosomal DNA to estimate their diversity in the region. With moderate sampling efforts, we discovered six operational taxonomic units (OTUs) in the Bay of Panama on the Pacific coast, in contrast to the single species previously recorded for the entire Tropical Eastern Pacific. We found eight OTUs in Bocas del Toro province on the Caribbean coast, compared to seven species documented from adults in the entire Caribbean. All OTUs differed from each other and from named acorn worm sequences in GenBank by >10% pairwise distance in COI and >...
Frontiers in Marine Science, 2019
Studies on the population structure of common widespread macroalgae in the Gulf of Mexico (GoMx) ... more Studies on the population structure of common widespread macroalgae in the Gulf of Mexico (GoMx) are scarce, and this knowledge gap limits our understanding on how disturbances affect the genetic diversity of macroalgae in this basin. The latter is due to the lack of a baseline that can be compared with allele frequency surveys conducted after a major disturbance such as the 2010 Deepwater Horizon oil spill (DWH), which leaked 780,000 m 3 of crude oil in the vicinity of highly diverse macroalgal communities. Fortunately, quantitative assessments of the population structure pre-DWH can be accomplished for several macroalgae with dried specimens collected from research cruises conducted before 2010 in the offshore GoMx. Based on three markers (cytochrome c oxidase subunit I, COX II-III intergenic spacer, and the RuBisCO large subunit), this study reconstructed the allele frequencies pre-DWH for a GoMxwidespread macroalga, Botryocladia occidentalis, and revealed the existence of distinct populations in each of three distant regions of the GoMx: Florida Middle Grounds (FL), Campeche Banks (CB), and offshore Louisiana (LA). Population structure was assessed with exact tests of population differentiation and Analyses of Molecular Variance. FL harbored the most differentiated and genetically diverse population due to the presence and abundance of unique haplotypes. Interestingly, FL haplotypes were not closely phylogenetically related to each other and included the most divergent lineages of the entire GoMx; this phylogeographic pattern suggests a strong influence of migrants from the Caribbean on the FL population. Additionally, likelihood ratio tests with a small sample collected post-DWH indicated that the LA population underwent strong changes, showing statistically significant differences before (LA) vs. after (L2) the disaster. Whereas the LA population had affinity to CB, L2 showed a FL haplotype
Bulletin of Marine and Coastal Research, 2016
Porites colonensis is a coral from the Caribbean Sea; colonies are foliaceous, undulated, and pla... more Porites colonensis is a coral from the Caribbean Sea; colonies are foliaceous, undulated, and plate-like. Polyps are dark brown or red with small bright white or green centers; pali are present in corallites and the septal plan is bisymmetrical, conformed by three fused ventral septa, a dorsal solitary septum, and two pairs of lateral septa at each side of the dorso-ventral axis. P. colonensis is similar and can be confused with the smooth varieties of Porites astreoides and Porites branneri. There are three specimens collected from Colombia and previously identified as P. colonensis: one from Golfo de Urabá (Darién ecoregion), other from Islas del Rosario (Coralline Archipelagos ecoregion), and another from an unspecified locality, in addition to one published observation from the Golfo de Urabá without collected specimens. A recent finding of other specimens in the Tayrona National Natural Park (TNNP, Tayrona ecoregion) and the absence of a rigorous taxonomic revision for all spec...
Invertebrate Biology, 2019
Phoronid larvae, actinotrochs, are beautiful and complicated organisms which have attracted as mu... more Phoronid larvae, actinotrochs, are beautiful and complicated organisms which have attracted as much, if not more, attention than their adult forms. We collected actinotrochs from the waters of the Pacific and Caribbean coasts of Panama, and used DNA barcoding of mtCOI, as well as 16S and 18S sequences, to estimate the diversity of phoronids in the region. We discovered three operational taxonomic units (OTUs) in the Bay of Panama on the Pacific coast and four OTUs in Bocas del Toro on the Caribbean coast. Not only did all OTUs differ from each other by >10% pairwise distance in COI, but they also differed from all phoronid sequences in GenBank, including the four species for which adults have been reported for the Pacific of Panama, Phoronopsis harmeri, Phoronis psammophila, Phoronis muelleri, and Phoronis hippocrepia. In each ocean region, one common OTU was more abundant and occurred more frequently than other OTUs in our samples. The other five OTUs were relatively rare, with ...
Biodiversity Data Journal, 2019
DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used... more DNA barcoding is a useful tool for documenting the diversity of metazoans. The most commonly used barcode markers, 16S and COI, are not considered suitable for species identification within some "basal" phyla of metazoans. Nevertheless metabarcoding studies of bulk mixed samples commonly use these markers and may obtain sequences for "basal" phyla. We sequenced mitochondrial DNA fragments of cytochrome oxidase c subunit I (COI), 16S ribosomal RNA (16S), NADH dehydrogenase subunits 2 (16S-ND2), 6 (ND6-ND3) and 4L (ND4L-MSH) for 27 species of Caribbean octocorals to create a reference barcode dataset and to compare the utility of COI and 16S to other markers more typically used for octocorals. The most common genera (Erythropodium, Ellisella, Briareum, Plexaurella, Muriceopsis and Pterogorgia) were effectively distinguished by small differences (5 or more substitutions or indels) in COI and 16S sequences. Gorgonia and Antillogorgia were effectively distinguished fr...
Diversity, 2018
Lingulids and discinids are the only brachiopods that exhibit life histories that include a feedi... more Lingulids and discinids are the only brachiopods that exhibit life histories that include a feeding planktonic stage usually referred to as a “larva”. We collected planktotrophic brachiopod larvae from the Pacific and Caribbean coasts of Panama and took a DNA barcoding approach with mitochondrial cytochrome c oxidase subunit I (COI), mitochondrial ribosomal 16S, and nuclear ribosomal 18S genes to identify those larvae and to estimate their diversity in the region. We observed specimens from both coasts with distinct morphologies typical of lingulid and discinid larvae. COI and 16S were sequenced successfully for the lingulid larvae but failed consistently for all discinid larvae. 18S was sequenced successfully for larvae from both families. Sequence data from each gene revealed one lingulid operational taxonomic unit (OTU) from Bocas del Toro on the Caribbean coast, and one lingulid OTU from the Bay of Panama on the Pacific coast. These OTUs differed by >20% for COI, >10% for ...
Cryptogamie, Algologie, 2014
In the northwestern Gulf of Mexico, beds of rhodoliths and unconsolidated rubble at 55-70 m depth... more In the northwestern Gulf of Mexico, beds of rhodoliths and unconsolidated rubble at 55-70 m depth are associated with unique offshore deep bank habitats known as salt domes or diapirs. Prior to the 2010 BP Deepwater Horizon oil spill these harbored the highest known seaweed diversity in the northern Gulf of Mexico. Six post-spill cruises led offshore Louisiana to two sites previously documented with rich algal assemblages (i.e. prespill) revealed a dramatic post-spill die-off of seaweeds at both sites, with dredged rhodoliths appearing bleached and mostly denuded of fleshy algae, or "bare" (with a few crustose genera only, e.g. Corallinales and Peyssonneliales). This rubble, brought to the laboratory and maintained in a series of~75 liter microcosm tanks, gradually became covered by a suite of red, green and brown seaweed germlings that to this day continue to grow to adult size, reproduce, disappear and re-emerge, and whose species composition reflects pre-spill assemblages. These experiments revealed the expression of biodiversity from alternative life stages or resting stages apparently repressed in the Gulf at the time of sampling, including new, previously overlooked diversity. The rate of algal succession was documented by biweekly photography, and species taxonomic identity is being confirmed by ongoing molecular and morphological evidence. The implications of these exciting results, namely that undetected propagules, spores and endolithic filaments collected along with the "bare" substrata and in situ seawater have been triggered to germinate, grow, and reproduce under laboratory conditions are far-reaching. We hypothesize the function of rhodoliths and rubble as marine seedbanks for biological diversity and explore the role of this ecosystem for community resilience following a major anthropogenic disaster. This is a speculative paper since we currently lack many rigorous, quantitative data. The paper is envisioned as a "first step" in approaching the dynamics of rhodoliths and associated diversity following a catastrophic anthropogenic event, from which the algal and invertebrate diversity has not recovered, as of October 2013, our last collecting expedition to Ewing Bank in the NW Gulf of Mexico.
virtual.unal.edu.co
RESUMEN Se realizó un inventario de los corales pétreos que habitan en la bahía de Taganga entre ... more RESUMEN Se realizó un inventario de los corales pétreos que habitan en la bahía de Taganga entre los 0-4 m de profundidad. Se encontraron un total de 22 especies distribuidas en nueve familias, de las cuales Faviidae presentó la mayor representación de especies (diez), ...
Marine Ecology Progress Series, 2011
Inhibition of early life stages of corals by benthic algae is a critical bottleneck to the recove... more Inhibition of early life stages of corals by benthic algae is a critical bottleneck to the recovery and resilience of corals. Increasingly frequent and severe disturbances are causing large- scale coral mortality, usually followed by colonisation and dominance by benthic algae. The capacity of corals to re-establish in such algal-dominated habitats will depend on the effects of the algae on growth and survivorship of juvenile corals. We experimentally evaluated the competition between juvenile corals Porites astreoides and algae and the effects of algae on the exposure of juvenile corals to damage by parrotfishes (family Scaridae) in a Colombian Caribbean reef. We also explored whether those effects were consistent among climatic seasons (upwelling and non-upwelling). Ben- thic algae had negative and positive effects on the juvenile corals. The removal of algal turfs and fleshy macroalgae enhanced coral growth. Unexpectedly, removal of algae from around the juvenile corals increased...