Bioconductor (original) (raw)

Comment: parameters of filterByExpr bycaroline.zanchi • 0

Our smallest group is 19 flies. So in my case, MinSampleSize > large.n : k = 18+(19-18)*0.7 = 12.6 samples ~ 12 samples should have at lea…

Answer: DiffBind - question on the use of filtered or unfiltered input data byQFC • 0

The website I was working on still had a lot of room for improvement. Despite my commitment to building everything from the ground up I sta…

Answer: Filtering after DESeq byChaseWendrix • 0

The user discusses filtering RNA-seq data post-DESeq analysis, noting that genes with counts in only a few individuals may still be biologi…

Comment: DESEQ2 - Correctly altering log2foldchange when switching comparison direction ( bysk • 0

I have two brief questions: *Question 1:* I am primarily using the apeglm comparison output, but I am required to provide a 'coef' value;…

Comment: parameters of filterByExpr byGordon Smyth 52k

It is best to read the documentation for the function. The `large.n` value is used only to adjust the `MinSampleSize` estimate. If you type…