Takeshi Kon | The University of Tokyo (original) (raw)

Papers by Takeshi Kon

Marine Biology, 2006

The tropical lancelet Asymmetron lucayanum (= Epigonichthys lucayanus) is distributed from the we... more The tropical lancelet Asymmetron lucayanum (= Epigonichthys lucayanus) is distributed from the western Indian Ocean to the central Pacific Ocean, and the western Atlantic Ocean. Molecular phylogenetic analysis of mitochondrial cytochrome c oxidase subunit I (COI) sequences (1,035 bp) of A. lucayanum (80 specimens from seven localities) showed clearly that this species is genetically distinguished into three major groups of geographical populations based on neighbor-joining tree using maximum likelihood distance (HKY model with invariable sites and gamma correction), suggesting the existence of three cryptic species. Our genetic data show that (1) inter-oceanic divergence time between Clade B (the West-Central Pacific) and Clade C (the Atlantic) (d = 6.6%, ca. 12 million years ago) was smaller than intra-oceanic divergence time between Clade A (the Indo-West Pacific) and Clade B (d=39.5%, ca. 100 million years ago); (2) there are two cryptic species in the West Pacific in sympatry; and (3) high gene flow is implied between the Maldives and the Ryukyus in Clade A (10,000 km distance), the Philippines and Hawaii in Clade B (8,500 km distance), and Barbados and Bermuda in Clade C (2,200 km distance).

Ichthyological Research, 1997

A new fossil priacanthid fish,Cookeolus spinolacrymatus, is described on the basis of a single sp... more A new fossil priacanthid fish,Cookeolus spinolacrymatus, is described on the basis of a single specimen from the Late Pliocene Shinzato Formation, Shimajiri Group, Miyagi-shima, Okinawa, Japan. This species is distinguished from the Recent speciesC. japonicus (Cuvier, 1828) by having a strong spine on the anterior portion of the lacrymal. The specimen was identified as a small benthic adult, or large juvenile, based on comparison with pelvic fin length development in the Recent species.

Ichthyological Research, 2002

Extremely small animals including fishes have been reported with discussion of the causes and co... more Extremely small animals including fishes have been reported with discussion of the causes and consequences of their miniaturization. Here we demonstrate, for the first time, very early (i.e., 23–60 days old and 42–67 days old) sexual maturity in two groups of gobioid fishes (Schindleria and Paedogobius, respectively) in warm water, based on the otolith increments. The generation time of Schindleria is the shortest known among vertebrates under natural conditions. We discuss the occurrence and evolutionary significance of the progenesis found in gobioid fishes.

Ichthyological Research, 1999

A taxonomic review of Japanese species of the creediid genusLimnichthys recognised the following:... more A taxonomic review of Japanese species of the creediid genusLimnichthys recognised the following:L. fasciatus, L. nitidus (a senior synonym ofL. donaldsoni) andL. orientalis sp. nov.L. fasciatus has an antitropical distribution.L. orientalis sp. nov. differs from its most similar congener,L. nitidus, in having fewer scales above and below the lateral line (2 vs. 3) and the fifth pelvic fin ray shorter or absent, and in the shape of cirri on the lower jaw.

Ichthyological Research, 1997

A new fossil serranid fish,Niphon macrocephalus, is described on the basis of a single specimen f... more A new fossil serranid fish,Niphon macrocephalus, is described on the basis of a single specimen from the Late Pliocene Shinzato Formation, Shimajiri Group, Miyagi-shima, Okinawa, Japan. This species is distinguished from the Recent speciesNiphon spinosus Cuvier, 1828, in having the following four characters: (1) large head, (2) long frontals, (3) rounded posteroventral angle of maxilla, and (4) large 3rd hypural.

BMC Evolutionary Biology, 2007

Background The lancelet Asymmetron inferum (subphylum Cephalochordata) was recently discovered on... more Background The lancelet Asymmetron inferum (subphylum Cephalochordata) was recently discovered on the ocean floor off the southwest coast of Japan at a depth of 229 m, in an anaerobic and sulfide-rich environment caused by decomposing bodies of the sperm whale Physeter macrocephalus. This deep sulfide-rich habitat of A. inferum is unique among the lancelets. The distinguishing adaptation of this species to such an extraordinary habitat can be considered in a phylogenetic framework. As the first step of reconstruction of the evolutionary processes in this species, we investigated its phylogenetic position based on 11 whole mitochondrial genome sequences including the newly determined ones of the whale-fall lancelet A. inferum and two coral-reef congeners. Results Our phylogenetic analyses showed that extant lancelets are clustered into two major clades, the Asymmetron clade and the Epigonichthys + Branchiostoma clade. A. inferum was in the former and placed in the sister group to A. lucayanum complex. The divergence time between A. inferum and A. lucayanum complex was estimated to be 115 Mya using the penalized likelihood (PL) method or 97 Mya using the nonparametric rate smoothing (NPRS) method (the middle Cretaceous). These are far older than the first appearance of large whales (the middle Eocene, 40 Mya). We also discovered that A. inferum mitogenome (mitochondrial genome) has been subjected to large-scale gene rearrangements, one feature of rearrangements being unique among the lancelets and two features shared with A. lucayanum complex. Conclusion Our study supports the monophyly of genus Asymmetron assumed on the basis of the morphological characters. Furthermore, the features of the A. inferum mitogenome expand our knowledge of variation within cephalochordate mitogenomes, adding a new case of transposition and inversion of the trnQ gene. Our divergence time estimation suggests that A. inferum remained a member of the Mesozoic and the early Cenozoic large vertebrate-fall communities before shifting to become a whale-fall specialist.

Ichthyological Research, 2011

The extremely paedomorphic fish Schindleria (Gobioidei, Schindleriidae) is widely distributed in ... more The extremely paedomorphic fish Schindleria (Gobioidei, Schindleriidae) is widely distributed in the Indo-Pacific Ocean, inhabiting coral reef lagoons. At least 21 cryptic species (Schindleria spp. 1–21) have been discovered around the Ryukyu and Ogasawara Islands. As a first step in extending the survey areas to the entire Indo-Pacific Ocean, the present study collected and examined Schindleria in Palau, located approximately 2,200 km from the Ryukyu Islands, for any cryptic diversity. Molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences of 71 specimens revealed four new cryptic species of Schindleria spp. 22–25 (Palau 1–4) in Palau.

Ichthyological Research, 1999

A new serranid fish,Liopropoma dorsoluteum sp. nov., is described on the basis of two specimens f... more A new serranid fish,Liopropoma dorsoluteum sp. nov., is described on the basis of two specimens from Yaeyama Is., Okinawa, Japan. The new species is most similar toL. erythaeum Randall & Taylor, 1988, in having the following characters: Dorsal fin rays VIII, 12; anal fin rays III, 9; pored lateral line scales 52–53; anterior nostril situated midway between posterior nostril and anterior tip of snout; slightly forked caudal fin with both lobes rounded. It differs from the latter species in having a shorter pectoral fin (23.4–23.8% SL vs. 26.9–29.0% SL), greater preanus length (65.6–68.0% SL vs. 63.3–65.1% SL), fewer gill rakers (6+12 vs. 6–7+14–15) and yellow coloration on the back (vs. light red on head and body) in fresh specimens.

Ichthyological Research, 2010

The swamp eel Monopterus albus is widely distributed in tropical and subtropical freshwaters rang... more The swamp eel Monopterus albus is widely distributed in tropical and subtropical freshwaters ranging from Southeast Asia to East Asia, and is unique in its ability to breathe air through the buccal mucosa. To examine the genetic structure of this widespread species, molecular phylogenetic analyses of mitochondrial 16S rRNA sequence (514 bp) were conducted for 84 specimens from 13 localities in Southeast and East Asia. The analyses showed clearly that this species can be genetically delineated into three clades based on geographical populations [China–Japan (Honshu + Kyushu), Ryukyu Islands, and Southeast Asia clades], with each clade exhibiting its own reproductive behavior. Therefore, “M. albus” is believed to be composed of at least three species. The Southeast Asia clade with the highest genetic diversity may include more species. The Ryukyu clade was estimated to have diverged more than 5.7 million years ago, suggesting that the Ryukyuan “M. albus” is native. In contrast, in the China–Japan clade, all haplotypes from Japan were closely related to those from China, suggesting artificial introduction(s).

Ichthyological Research, 2000

A new anthiine fish,Holanthias kingyo sp, nov., is described on the basis of two specimens (male ... more A new anthiine fish,Holanthias kingyo sp, nov., is described on the basis of two specimens (male and female) from the Ryukyu Is., Japan. The new species is most similar toH. natalensis (Fowler, 1925), known only from South Africa, in having the following characters: dorsal fin soft rays 16 or 17, anal fin soft rays 9, pored lateral line scales 46 or 47, scale rows above lateral line to origin of dorsal fin 9 1/2 or 10 1/2, and gill rakers 10 or 11 +24 or 25=34–36. It differs from the latter in having more scales below the lateral line to the origin of the anal fin (27 1/2 vs. 18–24), a U-shaped caudal fin with paddle-like lobes (vs. deeply forked caudal fin with each lobe ending in a long slender filament), the outer margin of the soft anal fin vertical (vs. gently convex) and brown spots on the body in female (vs. spots absent in females).

Ichthyological Research, 2003

The fluviatile Rhinogobius sp. 1 (hereinafter R. sp. 1) (Japanese name kibara-yoshinobori or Eng... more The fluviatile Rhinogobius sp. 1 (hereinafter R. sp. 1) (Japanese name kibara-yoshinobori or English name yellow belly medium-egg type) is broadly distributed in the Ryukyu Islands ranging from Amami-oshima Island to Iriomote Island. However, based on the molecular evidence, this species has probably had multiple origins from amphidromous species. We compared the coloration of specimens at Amami-oshima I. with that of the other specimens (islands) in the Ryukyu Is. Amami-oshima I. specimens of R. sp. 1 were different from the specimens of other populations in having five to six cross lines on the caudal fin. We examined the early life history of fluviatile Rhinogobius at Amami-oshima I., based on rearing experiments, and estimated the age of wild specimens by counting otolith increments. Spawned egg capsules of “Rhinogobius sp. 1” at Amami-oshima I. were larger than those of amphidromous species. Their developmental stage in newly hatched larvae was similar to that of Okinawan R. sp. 1 in having a straight notochord; however, it had a flexed notochord earlier than that of Rhinogobius sp. 2 (hereinafter R. sp. 2) (aobara-yoshinobori or blue belly medium-egg type). The ontogenetic trajectory of “Rhinogobius sp. 1” in Amami-oshima I. was similar to Okinawan R. sp. 1 (30 days in larval duration) but different from R. sp. 2 (15 days). In amphidromous relatives of R. sp. 2, developmental timing during larval period was earlier than in the amphidromous relatives of R. sp. 1. It has been suggested that the phenomenon of fluvial landlocking has been accompanied somewhat by egg size increase (on the basis of a few examples). However, the ontogenetic trajectories of fluviatile Rhinogobius species may be a reflection of those of ancestral amphidromous species.

Molecular Phylogenetics and Evolution, 2007

Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest rep... more Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest reproducing vertebrates, is broadly distributed in the Indo-Pacific Oceans, inhabiting coral reef lagoons. They are all characterized by a reduced larval-like form, such as a slender translucent and scaleless body. The three nominal species recognized in the genus to date have been distinguished by only combination of dorsal and anal fin-ray counts, and the existence of some undescribed species has been suggested in Schindleria; thus a total picture of species composition of the genus is poorly known. Towards the disclosure of diversity of Schindleria, a molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences was conducted for specimens from the Ryukyu and Ogasawara Islands, Japan. This analysis showed clearly that as many as 21 genetically distinguishable species occurred within the geographical areas. The degree of species crypticness of ''S. praematura'' [15.0 = 15 (new cryptic species + known species)/1 (known species)] is higher than the values of well-known animal examples, such as the pan-mesopelagic bristlemouth fish Cyclothone alba (5.0) and the South American skipper butterfly Astraptes fulgerator (10.0). This discovery of many cryptic species in Schindleria suggests that the use of DNA sequences is necessary for species identification of such morphologically conserved taxa. Because molecular analyses should increase the number of hitherto unnamed and pseudonymous species, especially in tropical areas, it is proposed that DNA-based designation is necessary for such taxa in order to compile the full ''species lists'', although there is presently no consensus for the inclusion of DNA sequencing data in the formal descriptions of new species.

BMC Evolutionary Biology, 2010

Background Carassius auratus is a primary freshwater fish with bisexual diploid and unisexual gyn... more Background Carassius auratus is a primary freshwater fish with bisexual diploid and unisexual gynogenetic triploid lineages. It is distributed widely in Eurasia and is especially common in East Asia. Although several genetic studies have been conducted on C. auratus, they have not provided clear phylogenetic and evolutionary descriptions of this fish, probably due to selection bias in sampling sites and the DNA regions analysed. As the first step in clarifying the evolutionary entity of the world's Carassius fishes, we attempted to clarify the phylogeny of C. auratus populations distributed in East Asia. Results We conducted a detailed analysis of a large dataset of mitochondrial gene sequences [CR, 323 bp, 672 sequences (528 sequenced + 144 downloaded); CR + ND4 + ND5 + cyt b, 4669 bp in total, 53 sequences] obtained from C. auratus in East Asia. Our phylogeographic analysis revealed two superlineages, one distributed mainly among the Japanese main islands and the other in various regions in and around the Eurasian continent, including the Ryukyus and Taiwan. The two superlineages include seven lineages with high regional specificity that are composed of endemic populations indigenous to each region. The divergence time of the seven lineages was estimated to be 0.2 million years ago (Mya) by a fossil-based method and 1.0-1.9 Mya by the molecular clock method. The antiquity and endemism of these lineages suggest that they are native to their respective regions, although some seem to have been affected by the artificial introduction of C. auratus belonging to other lineages. Triploids of C. auratus did not form a monophyletic lineage but were clustered mostly with sympatric diploids. Conclusions The results of the present study revealed the existence of two superlineages of C. auratus in East Asia that include seven lineages endemic to each of the seven regions examined. The lack of substantial genetic separation between triploids and diploids indicates that triploids are not composed of a single independent lineage. The ancient origins and evolutionary uniqueness of the seven lineages warrant their conservation. An overall phylogenetic framework obtained from the present study will be of use for estimating the phylogenetic relationships of Carassius fishes on the Eurasian continent.

Marine Biology, 2006

The tropical lancelet Asymmetron lucayanum (= Epigonichthys lucayanus) is distributed from the we... more The tropical lancelet Asymmetron lucayanum (= Epigonichthys lucayanus) is distributed from the western Indian Ocean to the central Pacific Ocean, and the western Atlantic Ocean. Molecular phylogenetic analysis of mitochondrial cytochrome c oxidase subunit I (COI) sequences (1,035 bp) of A. lucayanum (80 specimens from seven localities) showed clearly that this species is genetically distinguished into three major groups of geographical populations based on neighbor-joining tree using maximum likelihood distance (HKY model with invariable sites and gamma correction), suggesting the existence of three cryptic species. Our genetic data show that (1) inter-oceanic divergence time between Clade B (the West-Central Pacific) and Clade C (the Atlantic) (d = 6.6%, ca. 12 million years ago) was smaller than intra-oceanic divergence time between Clade A (the Indo-West Pacific) and Clade B (d=39.5%, ca. 100 million years ago); (2) there are two cryptic species in the West Pacific in sympatry; and (3) high gene flow is implied between the Maldives and the Ryukyus in Clade A (10,000 km distance), the Philippines and Hawaii in Clade B (8,500 km distance), and Barbados and Bermuda in Clade C (2,200 km distance).

Ichthyological Research, 1997

A new fossil priacanthid fish,Cookeolus spinolacrymatus, is described on the basis of a single sp... more A new fossil priacanthid fish,Cookeolus spinolacrymatus, is described on the basis of a single specimen from the Late Pliocene Shinzato Formation, Shimajiri Group, Miyagi-shima, Okinawa, Japan. This species is distinguished from the Recent speciesC. japonicus (Cuvier, 1828) by having a strong spine on the anterior portion of the lacrymal. The specimen was identified as a small benthic adult, or large juvenile, based on comparison with pelvic fin length development in the Recent species.

Ichthyological Research, 2002

Extremely small animals including fishes have been reported with discussion of the causes and co... more Extremely small animals including fishes have been reported with discussion of the causes and consequences of their miniaturization. Here we demonstrate, for the first time, very early (i.e., 23–60 days old and 42–67 days old) sexual maturity in two groups of gobioid fishes (Schindleria and Paedogobius, respectively) in warm water, based on the otolith increments. The generation time of Schindleria is the shortest known among vertebrates under natural conditions. We discuss the occurrence and evolutionary significance of the progenesis found in gobioid fishes.

Ichthyological Research, 1999

A taxonomic review of Japanese species of the creediid genusLimnichthys recognised the following:... more A taxonomic review of Japanese species of the creediid genusLimnichthys recognised the following:L. fasciatus, L. nitidus (a senior synonym ofL. donaldsoni) andL. orientalis sp. nov.L. fasciatus has an antitropical distribution.L. orientalis sp. nov. differs from its most similar congener,L. nitidus, in having fewer scales above and below the lateral line (2 vs. 3) and the fifth pelvic fin ray shorter or absent, and in the shape of cirri on the lower jaw.

Ichthyological Research, 1997

A new fossil serranid fish,Niphon macrocephalus, is described on the basis of a single specimen f... more A new fossil serranid fish,Niphon macrocephalus, is described on the basis of a single specimen from the Late Pliocene Shinzato Formation, Shimajiri Group, Miyagi-shima, Okinawa, Japan. This species is distinguished from the Recent speciesNiphon spinosus Cuvier, 1828, in having the following four characters: (1) large head, (2) long frontals, (3) rounded posteroventral angle of maxilla, and (4) large 3rd hypural.

BMC Evolutionary Biology, 2007

Background The lancelet Asymmetron inferum (subphylum Cephalochordata) was recently discovered on... more Background The lancelet Asymmetron inferum (subphylum Cephalochordata) was recently discovered on the ocean floor off the southwest coast of Japan at a depth of 229 m, in an anaerobic and sulfide-rich environment caused by decomposing bodies of the sperm whale Physeter macrocephalus. This deep sulfide-rich habitat of A. inferum is unique among the lancelets. The distinguishing adaptation of this species to such an extraordinary habitat can be considered in a phylogenetic framework. As the first step of reconstruction of the evolutionary processes in this species, we investigated its phylogenetic position based on 11 whole mitochondrial genome sequences including the newly determined ones of the whale-fall lancelet A. inferum and two coral-reef congeners. Results Our phylogenetic analyses showed that extant lancelets are clustered into two major clades, the Asymmetron clade and the Epigonichthys + Branchiostoma clade. A. inferum was in the former and placed in the sister group to A. lucayanum complex. The divergence time between A. inferum and A. lucayanum complex was estimated to be 115 Mya using the penalized likelihood (PL) method or 97 Mya using the nonparametric rate smoothing (NPRS) method (the middle Cretaceous). These are far older than the first appearance of large whales (the middle Eocene, 40 Mya). We also discovered that A. inferum mitogenome (mitochondrial genome) has been subjected to large-scale gene rearrangements, one feature of rearrangements being unique among the lancelets and two features shared with A. lucayanum complex. Conclusion Our study supports the monophyly of genus Asymmetron assumed on the basis of the morphological characters. Furthermore, the features of the A. inferum mitogenome expand our knowledge of variation within cephalochordate mitogenomes, adding a new case of transposition and inversion of the trnQ gene. Our divergence time estimation suggests that A. inferum remained a member of the Mesozoic and the early Cenozoic large vertebrate-fall communities before shifting to become a whale-fall specialist.

Ichthyological Research, 2011

The extremely paedomorphic fish Schindleria (Gobioidei, Schindleriidae) is widely distributed in ... more The extremely paedomorphic fish Schindleria (Gobioidei, Schindleriidae) is widely distributed in the Indo-Pacific Ocean, inhabiting coral reef lagoons. At least 21 cryptic species (Schindleria spp. 1–21) have been discovered around the Ryukyu and Ogasawara Islands. As a first step in extending the survey areas to the entire Indo-Pacific Ocean, the present study collected and examined Schindleria in Palau, located approximately 2,200 km from the Ryukyu Islands, for any cryptic diversity. Molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences of 71 specimens revealed four new cryptic species of Schindleria spp. 22–25 (Palau 1–4) in Palau.

Ichthyological Research, 1999

A new serranid fish,Liopropoma dorsoluteum sp. nov., is described on the basis of two specimens f... more A new serranid fish,Liopropoma dorsoluteum sp. nov., is described on the basis of two specimens from Yaeyama Is., Okinawa, Japan. The new species is most similar toL. erythaeum Randall & Taylor, 1988, in having the following characters: Dorsal fin rays VIII, 12; anal fin rays III, 9; pored lateral line scales 52–53; anterior nostril situated midway between posterior nostril and anterior tip of snout; slightly forked caudal fin with both lobes rounded. It differs from the latter species in having a shorter pectoral fin (23.4–23.8% SL vs. 26.9–29.0% SL), greater preanus length (65.6–68.0% SL vs. 63.3–65.1% SL), fewer gill rakers (6+12 vs. 6–7+14–15) and yellow coloration on the back (vs. light red on head and body) in fresh specimens.

Ichthyological Research, 2010

The swamp eel Monopterus albus is widely distributed in tropical and subtropical freshwaters rang... more The swamp eel Monopterus albus is widely distributed in tropical and subtropical freshwaters ranging from Southeast Asia to East Asia, and is unique in its ability to breathe air through the buccal mucosa. To examine the genetic structure of this widespread species, molecular phylogenetic analyses of mitochondrial 16S rRNA sequence (514 bp) were conducted for 84 specimens from 13 localities in Southeast and East Asia. The analyses showed clearly that this species can be genetically delineated into three clades based on geographical populations [China–Japan (Honshu + Kyushu), Ryukyu Islands, and Southeast Asia clades], with each clade exhibiting its own reproductive behavior. Therefore, “M. albus” is believed to be composed of at least three species. The Southeast Asia clade with the highest genetic diversity may include more species. The Ryukyu clade was estimated to have diverged more than 5.7 million years ago, suggesting that the Ryukyuan “M. albus” is native. In contrast, in the China–Japan clade, all haplotypes from Japan were closely related to those from China, suggesting artificial introduction(s).

Ichthyological Research, 2000

A new anthiine fish,Holanthias kingyo sp, nov., is described on the basis of two specimens (male ... more A new anthiine fish,Holanthias kingyo sp, nov., is described on the basis of two specimens (male and female) from the Ryukyu Is., Japan. The new species is most similar toH. natalensis (Fowler, 1925), known only from South Africa, in having the following characters: dorsal fin soft rays 16 or 17, anal fin soft rays 9, pored lateral line scales 46 or 47, scale rows above lateral line to origin of dorsal fin 9 1/2 or 10 1/2, and gill rakers 10 or 11 +24 or 25=34–36. It differs from the latter in having more scales below the lateral line to the origin of the anal fin (27 1/2 vs. 18–24), a U-shaped caudal fin with paddle-like lobes (vs. deeply forked caudal fin with each lobe ending in a long slender filament), the outer margin of the soft anal fin vertical (vs. gently convex) and brown spots on the body in female (vs. spots absent in females).

Ichthyological Research, 2003

The fluviatile Rhinogobius sp. 1 (hereinafter R. sp. 1) (Japanese name kibara-yoshinobori or Eng... more The fluviatile Rhinogobius sp. 1 (hereinafter R. sp. 1) (Japanese name kibara-yoshinobori or English name yellow belly medium-egg type) is broadly distributed in the Ryukyu Islands ranging from Amami-oshima Island to Iriomote Island. However, based on the molecular evidence, this species has probably had multiple origins from amphidromous species. We compared the coloration of specimens at Amami-oshima I. with that of the other specimens (islands) in the Ryukyu Is. Amami-oshima I. specimens of R. sp. 1 were different from the specimens of other populations in having five to six cross lines on the caudal fin. We examined the early life history of fluviatile Rhinogobius at Amami-oshima I., based on rearing experiments, and estimated the age of wild specimens by counting otolith increments. Spawned egg capsules of “Rhinogobius sp. 1” at Amami-oshima I. were larger than those of amphidromous species. Their developmental stage in newly hatched larvae was similar to that of Okinawan R. sp. 1 in having a straight notochord; however, it had a flexed notochord earlier than that of Rhinogobius sp. 2 (hereinafter R. sp. 2) (aobara-yoshinobori or blue belly medium-egg type). The ontogenetic trajectory of “Rhinogobius sp. 1” in Amami-oshima I. was similar to Okinawan R. sp. 1 (30 days in larval duration) but different from R. sp. 2 (15 days). In amphidromous relatives of R. sp. 2, developmental timing during larval period was earlier than in the amphidromous relatives of R. sp. 1. It has been suggested that the phenomenon of fluvial landlocking has been accompanied somewhat by egg size increase (on the basis of a few examples). However, the ontogenetic trajectories of fluviatile Rhinogobius species may be a reflection of those of ancestral amphidromous species.

Molecular Phylogenetics and Evolution, 2007

Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest rep... more Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest reproducing vertebrates, is broadly distributed in the Indo-Pacific Oceans, inhabiting coral reef lagoons. They are all characterized by a reduced larval-like form, such as a slender translucent and scaleless body. The three nominal species recognized in the genus to date have been distinguished by only combination of dorsal and anal fin-ray counts, and the existence of some undescribed species has been suggested in Schindleria; thus a total picture of species composition of the genus is poorly known. Towards the disclosure of diversity of Schindleria, a molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences was conducted for specimens from the Ryukyu and Ogasawara Islands, Japan. This analysis showed clearly that as many as 21 genetically distinguishable species occurred within the geographical areas. The degree of species crypticness of ''S. praematura'' [15.0 = 15 (new cryptic species + known species)/1 (known species)] is higher than the values of well-known animal examples, such as the pan-mesopelagic bristlemouth fish Cyclothone alba (5.0) and the South American skipper butterfly Astraptes fulgerator (10.0). This discovery of many cryptic species in Schindleria suggests that the use of DNA sequences is necessary for species identification of such morphologically conserved taxa. Because molecular analyses should increase the number of hitherto unnamed and pseudonymous species, especially in tropical areas, it is proposed that DNA-based designation is necessary for such taxa in order to compile the full ''species lists'', although there is presently no consensus for the inclusion of DNA sequencing data in the formal descriptions of new species.

BMC Evolutionary Biology, 2010

Background Carassius auratus is a primary freshwater fish with bisexual diploid and unisexual gyn... more Background Carassius auratus is a primary freshwater fish with bisexual diploid and unisexual gynogenetic triploid lineages. It is distributed widely in Eurasia and is especially common in East Asia. Although several genetic studies have been conducted on C. auratus, they have not provided clear phylogenetic and evolutionary descriptions of this fish, probably due to selection bias in sampling sites and the DNA regions analysed. As the first step in clarifying the evolutionary entity of the world's Carassius fishes, we attempted to clarify the phylogeny of C. auratus populations distributed in East Asia. Results We conducted a detailed analysis of a large dataset of mitochondrial gene sequences [CR, 323 bp, 672 sequences (528 sequenced + 144 downloaded); CR + ND4 + ND5 + cyt b, 4669 bp in total, 53 sequences] obtained from C. auratus in East Asia. Our phylogeographic analysis revealed two superlineages, one distributed mainly among the Japanese main islands and the other in various regions in and around the Eurasian continent, including the Ryukyus and Taiwan. The two superlineages include seven lineages with high regional specificity that are composed of endemic populations indigenous to each region. The divergence time of the seven lineages was estimated to be 0.2 million years ago (Mya) by a fossil-based method and 1.0-1.9 Mya by the molecular clock method. The antiquity and endemism of these lineages suggest that they are native to their respective regions, although some seem to have been affected by the artificial introduction of C. auratus belonging to other lineages. Triploids of C. auratus did not form a monophyletic lineage but were clustered mostly with sympatric diploids. Conclusions The results of the present study revealed the existence of two superlineages of C. auratus in East Asia that include seven lineages endemic to each of the seven regions examined. The lack of substantial genetic separation between triploids and diploids indicates that triploids are not composed of a single independent lineage. The ancient origins and evolutionary uniqueness of the seven lineages warrant their conservation. An overall phylogenetic framework obtained from the present study will be of use for estimating the phylogenetic relationships of Carassius fishes on the Eurasian continent.