Anita Radini | University College Dublin (original) (raw)
Published Papers by Anita Radini
The North African region offers up essential data for the study of the origins of the earliest fo... more The North African region offers up essential data for the study of the origins of the earliest forms of plant exploitation. Data available from several Saharan and coastal areas in the region have revealed that the arrival of domestic wheat and barley from the Levant during the Mid Holocene did not replace the exploitation of autochthonous wild plants, especially grasses. The Neolithic layers of the Haua Fteah cave, in Cyrenaica (Northern Libya), have so far produced archaeobotanical assemblages exclusively made up of wild species. This paper investigates production and use of non-knapped stone tools, mainly grinding stones, from the Holocene sequence of the Haua Fteah Cave. The presence of grinding stones may indicate a certain level of behavioural change and the adoption of new economic strategies, relying more strongly on plant exploitation. This assumption has been tested using an integrated approach of usewear and residue analysis. These methods allowed us to obtain significant new information as to how tools were originally used.
Reconstructing detailed aspects of the lives of Lower Palaeolithic hominins, who lived during the... more Reconstructing detailed aspects of the lives of Lower Palaeolithic hominins, who lived during the Middle Pleistocene, is challenging due to the restricted nature of the surviving evidence, predominantly animal bones and stone tools. Qesem Cave, Israel (420–200 ka) is a site that has produced evidence for a wealth of innovative features including controlled use of fire, represented by a repeatedly used hearth. Numerous charred bone and stone tools as well as wood ash have been found throughout the ten metres of archaeological deposits. Here, we describe the presence of a range of potentially inhaled, and ingested, materials extracted from samples of dental calculus from the Qesem Cave hominins. These finds offer an insight into the environment in and around the cave, while micro-charcoal highlights the need for smoke management in enclosed environments. Plant fibres and a phytolith may be evidence of oral hygiene activities or of using the teeth to work raw materials. Starch granules and chemical compounds provide a direct link to ingested plant food items. This extends the evidence for consumption of plant foods containing essential nutrients including polyunsaturated fatty acids and carbohydrates, into the Lower Palaeolithic. Together, these results represent a significant breakthrough towards a better understanding of Middle Pleistocene dietary breadth and highlight some of the challenges facing the adoption of the habitual use of fire for cooking by the Qesem Cave hominins, as well as offering an insight into their ecological knowledge and technological adaptability.
Calcified dental plaque (dental calculus) preserves for millennia and entraps biomolecules from a... more Calcified dental plaque (dental calculus) preserves for millennia and entraps biomolecules from all domains of life and viruses. We report the first, to our knowledge, high-resolution taxonomic and protein functional characterization of the ancient oral microbiome and demonstrate that the oral cavity has long served as a reservoir for bacteria implicated in both local and systemic disease. We characterize (i) the ancient oral microbiome in a diseased state, (ii) 40 opportunistic pathogens, (iii) ancient human–associated putative antibiotic resistance genes, (iv) a genome reconstruction of the periodontal pathogen Tannerella forsythia, (v) 239 bacterial and 43 human proteins, allowing confirmation of a long-term association between host immune factors, 'red complex' pathogens and periodontal disease, and (vi) DNA sequences matching dietary sources. Directly datable and nearly ubiquitous, dental calculus permits the simultaneous investigation of pathogen activity, host immunity and diet, thereby extending direct investigation of common diseases into the human evolutionary past.
PLOSone, Jul 16, 2014
Accessing information on plant consumption before the adoption of agriculture is challenging. How... more Accessing information on plant consumption before the adoption of agriculture is challenging. However, there is growing evidence for use of locally available wild plants from an increasing number of pre-agrarian sites, suggesting broad ecological knowledge. The extraction of chemical compounds and microfossils from dental calculus removed from ancient teeth offers an entirely new perspective on dietary reconstruction, as it provides empirical results on material that is already in the mouth. Here we present a suite of results from the multi-period Central Sudanese site of Al Khiday. We demonstrate the ingestion in both pre-agricultural and agricultural periods of Cyperus rotundus tubers. This plant is a good source of carbohydrates and has many useful medicinal and aromatic qualities, though today it is considered to be the world's most costly weed. Its ability to inhibit Streptococcus mutans may have contributed to the unexpectedly low level of caries found in the agricultural population. Other evidence extracted from the dental calculus includes smoke inhalation, dry (roasting) and wet (heating in water) cooking, a second plant possibly from the Triticaceae tribe and plant fibres suggestive of raw material preparation through chewing.
Dental plaque is not the first (or the most glamorous) thing that comes to mind when you think of... more Dental plaque is not the first (or the most glamorous) thing that comes to mind when you think of archaeology. So why would students like us spend a whole MSc or even a PhD studying it? In this article we outline the unexpected value of dental calculus, also called tartar, as a reservoir for information about the past, and how studying this material could give us enormous insight into ancient diseases, health and diet.
Survey by the DMP Burials and Identity team around the Tāqallit headland in 2009–2010 has reveale... more Survey by the DMP Burials and Identity team around the Tāqallit headland in 2009–2010 has revealed in exceptional detail a well-preserved Garamantian landscape, comprising extensive cemeteries, foggara irrigation systems and numerous oasis settlements. However, this remarkable survival of the Garamantian landscape was found in 2010 to be under direct and imminent threat of destruction. This report describes the landscape features recorded and the steps taken to try to preserve the evidence from obliteration in the face of modern agricultural development. Important new information was recorded about the date and furnishing of some key types of Proto-Urban tombs, linking with a refined view of the relationship of these cemeteries to contemporary foggara construction and the creation of pioneer farming settlement in the Tāqallit region. Significant additional details of the foggara systems were recorded through a combination of satellite image interpretation, surface observation and selective descent into rock-cut shafts. The discovery of an unexpected number of ancient settlements and structures of Garamantian date represents another major achievement of the work. The composite picture of the Garamantian landscape encompassing cemeteries, foggaras and settlements is arguably the most complete yet recorded in the FP/DMP work.
The fourth season of the Burials and Identity component of the Desert Migrations Project in 2010 ... more The fourth season of the Burials and Identity component of the Desert Migrations Project in 2010 focused on comple- tion of excavation work at two main cemeteries (TAG001 and TAG012) and smaller-scale sampling work at a number of nearby cemeteries. The investigation of a number of burials in a semi-nucleated escarpment cemetery TAG063 produced interesting new information on Proto-Urban Garamantian funerary rites, dating to the latter centuries bc. The excavations at TAG001 were extended to two areas of the cemetery characterised by different burial types to the stepped tombs that were excavated in 2009. A second type of fairly monumental burial was identified, but these had been heavily robbed and it was not possible to demonstrate conclusively that these pre-dated the stepped tombs. Most of the other burials excavated were simple shaft burials and were relatively sparsely furnished with imported goods, in comparison with the larger tombs, though quite a lot of organic material was identified (matting, wood, gourds, textiles and leather). At TAG012, a series of additional mud- brick tombs was emptied. All had been robbed, but pockets of the original fill and associated finds survived intact, yield- ing some interesting assemblages. The majority of these tombs appear to be Late Garamantian, though some con- tained artefacts from much earlier times.
The ‘Burials and Identity’ team of the Desert Migrations Project carried out two main excavations... more The ‘Burials and Identity’ team of the Desert Migrations Project carried out two main excavations in the 2009 season, at the monumental Garamantian cemeteries of TAG001 and TAG012, by the Taqallit headland. In addition, a detailed survey was made of cemeteries and other sites on the west side of the Taqallit headland, to set the two main cemetery excavations in context. A total of over 2,100 individual burials was recorded in this small area of a few square kilometres. This cemetery survey was combined with further research on the well-preserved foggara systems in this area, which originate at the escarpment among the cemeteries and run in a north-westerly direction towards the valley centre, where some additional Garamantian settlement sites were also located. The foggara research also involved excavation at four locations to try to elucidate issues relating to the dating of these.
A total of 22 burials was investigated at TAG001, an imposing cemetery of stone-built stepped tombs that had been badly damaged by illegal bulldozing in the 1990s. Although these had been subjected to robbing at some point in the past, many preserved considerable parts of the skeletons buried within and some surprisingly complete artifact groups. Of particular importance are a series of Garamantian necklaces in ostrich eggshell, carnelian and glass beads, which we were able to lift in perfect sequence and restring. At TAG012, about 2 km north of the Taqallit headland, we excavated an area of a mudbrick cemetery, exposing 12 square/rectangular tombs. Two further burials were excavated at the dispersed cemetery TAG006, in both cases involving tombs that had an interesting stratigraphical relationship with foggara spoil mounds
The Desert Migrations Project is a new interdisciplinary and multi-dimensional collaborative proj... more The Desert Migrations Project is a new interdisciplinary and multi-dimensional collaborative project between the Society for Libyan Studies and the Department of Antiquities. The geographical focus of the study is the Fazzan region of southwest Libya and in thematic terms we aim to address the theme of migration in the broadest sense, encompassing the movement of people, ideas/knowledge and material culture into and out of Fazzan, along with evidence of shifting climatic and ecological boundaries over time. The report describes the principal sub-strands of the project’s first season in January 2007, with some account of research questions, methods employed and some preliminary results. Three main sub-projects are reported on. The first concerns the improved understanding of long-term climatic and environmental changes derived from a detailed palaeoenvironmental study of palaeolake sediments. This geo-science work runs alongside and feeds directly into both archaeological sub-projects, the first relating to prehistoric activity and mobility around and between a series of palaeolakes during wetter climatic cycles; the second to the excavation of burials in the Wadi al-Ajal, exploring the changing relationship between material culture, identity and ethnicity across time, from prehistory to the early Islamic period (the span of the main cemetery zones). In addition, some rock art research and a survey of historic period sites was undertaken in the Wadi ash-Shati and Ubari sand sea.
Published Books Chapters by Anita Radini
Selected Professional Reports by Anita Radini
Conference Presentations (selected) by Anita Radini
This paper develops a reconstruction of the Holocene history of the deciduous nettle trees (Celti... more This paper develops a reconstruction of the Holocene history of the deciduous nettle trees (Celtis australis L. and C. integrifolia Lam.) in Northern Africa, with particular focus in the Central Sahara, integrating archaeobotanical , historical and ethnobotanical data. Particular attention has been given to the European nettle tree (Celtis australis L.) as this is thought to be the Lotus Tree described by Pliny as being eaten by the 'lotus eaters' in Libya, providing further evidence of the important role the tree had in human diet in the past. Methodological problems concerning the nature of the evidence and possible problems with the identifications of the two species are also discussed. The data obtained have been analyzed at different scales of space and time in order to assess the changing relationship between these species and people through time and to provide evidence that specimens of these trees may still grow today in refuge areas of the Central Sahara. A further aim of this case study is to prove the urgent need for biodiversity conservation work in Southern Libya, and to assess the role archaeobotanical and colonial-period data could play in conservation programs of plant species today, in a region at risk from high human impact due to political conflict and imminent exploitation of natural resources such as oil and minerals .
Keywords:
Keywords: Celtis australis, Celtis integrifolia, Nettle Tree, Holocene, Palaeogeography, Palaeoethnobotany, Central Sahara
The North African region offers up essential data for the study of the origins of the earliest fo... more The North African region offers up essential data for the study of the origins of the earliest forms of plant exploitation. Data available from several Saharan and coastal areas in the region have revealed that the arrival of domestic wheat and barley from the Levant during the Mid Holocene did not replace the exploitation of autochthonous wild plants, especially grasses. The Neolithic layers of the Haua Fteah cave, in Cyrenaica (Northern Libya), have so far produced archaeobotanical assemblages exclusively made up of wild species. This paper investigates production and use of non-knapped stone tools, mainly grinding stones, from the Holocene sequence of the Haua Fteah Cave. The presence of grinding stones may indicate a certain level of behavioural change and the adoption of new economic strategies, relying more strongly on plant exploitation. This assumption has been tested using an integrated approach of usewear and residue analysis. These methods allowed us to obtain significant new information as to how tools were originally used.
Reconstructing detailed aspects of the lives of Lower Palaeolithic hominins, who lived during the... more Reconstructing detailed aspects of the lives of Lower Palaeolithic hominins, who lived during the Middle Pleistocene, is challenging due to the restricted nature of the surviving evidence, predominantly animal bones and stone tools. Qesem Cave, Israel (420–200 ka) is a site that has produced evidence for a wealth of innovative features including controlled use of fire, represented by a repeatedly used hearth. Numerous charred bone and stone tools as well as wood ash have been found throughout the ten metres of archaeological deposits. Here, we describe the presence of a range of potentially inhaled, and ingested, materials extracted from samples of dental calculus from the Qesem Cave hominins. These finds offer an insight into the environment in and around the cave, while micro-charcoal highlights the need for smoke management in enclosed environments. Plant fibres and a phytolith may be evidence of oral hygiene activities or of using the teeth to work raw materials. Starch granules and chemical compounds provide a direct link to ingested plant food items. This extends the evidence for consumption of plant foods containing essential nutrients including polyunsaturated fatty acids and carbohydrates, into the Lower Palaeolithic. Together, these results represent a significant breakthrough towards a better understanding of Middle Pleistocene dietary breadth and highlight some of the challenges facing the adoption of the habitual use of fire for cooking by the Qesem Cave hominins, as well as offering an insight into their ecological knowledge and technological adaptability.
Calcified dental plaque (dental calculus) preserves for millennia and entraps biomolecules from a... more Calcified dental plaque (dental calculus) preserves for millennia and entraps biomolecules from all domains of life and viruses. We report the first, to our knowledge, high-resolution taxonomic and protein functional characterization of the ancient oral microbiome and demonstrate that the oral cavity has long served as a reservoir for bacteria implicated in both local and systemic disease. We characterize (i) the ancient oral microbiome in a diseased state, (ii) 40 opportunistic pathogens, (iii) ancient human–associated putative antibiotic resistance genes, (iv) a genome reconstruction of the periodontal pathogen Tannerella forsythia, (v) 239 bacterial and 43 human proteins, allowing confirmation of a long-term association between host immune factors, 'red complex' pathogens and periodontal disease, and (vi) DNA sequences matching dietary sources. Directly datable and nearly ubiquitous, dental calculus permits the simultaneous investigation of pathogen activity, host immunity and diet, thereby extending direct investigation of common diseases into the human evolutionary past.
PLOSone, Jul 16, 2014
Accessing information on plant consumption before the adoption of agriculture is challenging. How... more Accessing information on plant consumption before the adoption of agriculture is challenging. However, there is growing evidence for use of locally available wild plants from an increasing number of pre-agrarian sites, suggesting broad ecological knowledge. The extraction of chemical compounds and microfossils from dental calculus removed from ancient teeth offers an entirely new perspective on dietary reconstruction, as it provides empirical results on material that is already in the mouth. Here we present a suite of results from the multi-period Central Sudanese site of Al Khiday. We demonstrate the ingestion in both pre-agricultural and agricultural periods of Cyperus rotundus tubers. This plant is a good source of carbohydrates and has many useful medicinal and aromatic qualities, though today it is considered to be the world's most costly weed. Its ability to inhibit Streptococcus mutans may have contributed to the unexpectedly low level of caries found in the agricultural population. Other evidence extracted from the dental calculus includes smoke inhalation, dry (roasting) and wet (heating in water) cooking, a second plant possibly from the Triticaceae tribe and plant fibres suggestive of raw material preparation through chewing.
Dental plaque is not the first (or the most glamorous) thing that comes to mind when you think of... more Dental plaque is not the first (or the most glamorous) thing that comes to mind when you think of archaeology. So why would students like us spend a whole MSc or even a PhD studying it? In this article we outline the unexpected value of dental calculus, also called tartar, as a reservoir for information about the past, and how studying this material could give us enormous insight into ancient diseases, health and diet.
Survey by the DMP Burials and Identity team around the Tāqallit headland in 2009–2010 has reveale... more Survey by the DMP Burials and Identity team around the Tāqallit headland in 2009–2010 has revealed in exceptional detail a well-preserved Garamantian landscape, comprising extensive cemeteries, foggara irrigation systems and numerous oasis settlements. However, this remarkable survival of the Garamantian landscape was found in 2010 to be under direct and imminent threat of destruction. This report describes the landscape features recorded and the steps taken to try to preserve the evidence from obliteration in the face of modern agricultural development. Important new information was recorded about the date and furnishing of some key types of Proto-Urban tombs, linking with a refined view of the relationship of these cemeteries to contemporary foggara construction and the creation of pioneer farming settlement in the Tāqallit region. Significant additional details of the foggara systems were recorded through a combination of satellite image interpretation, surface observation and selective descent into rock-cut shafts. The discovery of an unexpected number of ancient settlements and structures of Garamantian date represents another major achievement of the work. The composite picture of the Garamantian landscape encompassing cemeteries, foggaras and settlements is arguably the most complete yet recorded in the FP/DMP work.
The fourth season of the Burials and Identity component of the Desert Migrations Project in 2010 ... more The fourth season of the Burials and Identity component of the Desert Migrations Project in 2010 focused on comple- tion of excavation work at two main cemeteries (TAG001 and TAG012) and smaller-scale sampling work at a number of nearby cemeteries. The investigation of a number of burials in a semi-nucleated escarpment cemetery TAG063 produced interesting new information on Proto-Urban Garamantian funerary rites, dating to the latter centuries bc. The excavations at TAG001 were extended to two areas of the cemetery characterised by different burial types to the stepped tombs that were excavated in 2009. A second type of fairly monumental burial was identified, but these had been heavily robbed and it was not possible to demonstrate conclusively that these pre-dated the stepped tombs. Most of the other burials excavated were simple shaft burials and were relatively sparsely furnished with imported goods, in comparison with the larger tombs, though quite a lot of organic material was identified (matting, wood, gourds, textiles and leather). At TAG012, a series of additional mud- brick tombs was emptied. All had been robbed, but pockets of the original fill and associated finds survived intact, yield- ing some interesting assemblages. The majority of these tombs appear to be Late Garamantian, though some con- tained artefacts from much earlier times.
The ‘Burials and Identity’ team of the Desert Migrations Project carried out two main excavations... more The ‘Burials and Identity’ team of the Desert Migrations Project carried out two main excavations in the 2009 season, at the monumental Garamantian cemeteries of TAG001 and TAG012, by the Taqallit headland. In addition, a detailed survey was made of cemeteries and other sites on the west side of the Taqallit headland, to set the two main cemetery excavations in context. A total of over 2,100 individual burials was recorded in this small area of a few square kilometres. This cemetery survey was combined with further research on the well-preserved foggara systems in this area, which originate at the escarpment among the cemeteries and run in a north-westerly direction towards the valley centre, where some additional Garamantian settlement sites were also located. The foggara research also involved excavation at four locations to try to elucidate issues relating to the dating of these.
A total of 22 burials was investigated at TAG001, an imposing cemetery of stone-built stepped tombs that had been badly damaged by illegal bulldozing in the 1990s. Although these had been subjected to robbing at some point in the past, many preserved considerable parts of the skeletons buried within and some surprisingly complete artifact groups. Of particular importance are a series of Garamantian necklaces in ostrich eggshell, carnelian and glass beads, which we were able to lift in perfect sequence and restring. At TAG012, about 2 km north of the Taqallit headland, we excavated an area of a mudbrick cemetery, exposing 12 square/rectangular tombs. Two further burials were excavated at the dispersed cemetery TAG006, in both cases involving tombs that had an interesting stratigraphical relationship with foggara spoil mounds
The Desert Migrations Project is a new interdisciplinary and multi-dimensional collaborative proj... more The Desert Migrations Project is a new interdisciplinary and multi-dimensional collaborative project between the Society for Libyan Studies and the Department of Antiquities. The geographical focus of the study is the Fazzan region of southwest Libya and in thematic terms we aim to address the theme of migration in the broadest sense, encompassing the movement of people, ideas/knowledge and material culture into and out of Fazzan, along with evidence of shifting climatic and ecological boundaries over time. The report describes the principal sub-strands of the project’s first season in January 2007, with some account of research questions, methods employed and some preliminary results. Three main sub-projects are reported on. The first concerns the improved understanding of long-term climatic and environmental changes derived from a detailed palaeoenvironmental study of palaeolake sediments. This geo-science work runs alongside and feeds directly into both archaeological sub-projects, the first relating to prehistoric activity and mobility around and between a series of palaeolakes during wetter climatic cycles; the second to the excavation of burials in the Wadi al-Ajal, exploring the changing relationship between material culture, identity and ethnicity across time, from prehistory to the early Islamic period (the span of the main cemetery zones). In addition, some rock art research and a survey of historic period sites was undertaken in the Wadi ash-Shati and Ubari sand sea.
This paper develops a reconstruction of the Holocene history of the deciduous nettle trees (Celti... more This paper develops a reconstruction of the Holocene history of the deciduous nettle trees (Celtis australis L. and C. integrifolia Lam.) in Northern Africa, with particular focus in the Central Sahara, integrating archaeobotanical , historical and ethnobotanical data. Particular attention has been given to the European nettle tree (Celtis australis L.) as this is thought to be the Lotus Tree described by Pliny as being eaten by the 'lotus eaters' in Libya, providing further evidence of the important role the tree had in human diet in the past. Methodological problems concerning the nature of the evidence and possible problems with the identifications of the two species are also discussed. The data obtained have been analyzed at different scales of space and time in order to assess the changing relationship between these species and people through time and to provide evidence that specimens of these trees may still grow today in refuge areas of the Central Sahara. A further aim of this case study is to prove the urgent need for biodiversity conservation work in Southern Libya, and to assess the role archaeobotanical and colonial-period data could play in conservation programs of plant species today, in a region at risk from high human impact due to political conflict and imminent exploitation of natural resources such as oil and minerals .
Keywords:
Keywords: Celtis australis, Celtis integrifolia, Nettle Tree, Holocene, Palaeogeography, Palaeoethnobotany, Central Sahara
Supplementary Figure 1 | Flux balance analysis applied to predicting specific growth rates in M. ... more Supplementary Figure 1 | Flux balance analysis applied to predicting specific growth rates in M. genitalium. Flux balance analysis applied to predicting specific growth rates in M. genitalium. (a) Distribution of non-essential metabolic genes (essentiality determined experimentally, see Ref. 6) in M. genitalium predicted by flux balance analysis. (b) A similar distribution using the whole-cell model (n = 5). Metabolic genes are colored orange; all other non-essential genes are colored green.