Jérémie F Cohen | Université Paris Descartes (original) (raw)

Uploads

Papers by Jérémie F Cohen

Research paper thumbnail of STARD 2015 guidelines for reporting diagnostic accuracy studies: explanation and elaboration

Diagnostic accuracy studies are, like other clinical studies, at risk of bias due to shortcomings... more Diagnostic accuracy studies are, like other clinical studies, at risk of bias due to shortcomings in design and conduct, and the results of a diagnostic accuracy study may not apply to other patient groups and settings. Readers of study reports need to be informed about study design and conduct, in sufficient detail to judge the trustworthiness and applicability of the study findings. The STARD statement (Standards for Reporting of Diagnostic Accuracy Studies) was developed to improve the completeness and transparency of reports of diagnostic accuracy studies. STARD contains a list of essential items that can be used as a checklist, by authors, reviewers and other readers, to ensure that a report of a diagnostic accuracy study contains the necessary information. STARD was recently updated. All updated STARD materials, including the checklist, are available at http:// www.equator-network.org/reporting-guidelines/stard. Here, we present the STARD 2015 explanation and elaboration document. Through commented examples of appropriate reporting, we clarify the rationale for each of the 30 items on the STARD 2015 checklist, and describe what is expected from authors in developing sufficiently informative study reports.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Rapid antigen detection test for group A streptococcus in children with pharyngitis (Review)

Background Group A streptococcus (GAS) accounts for 20% to 40% of cases of pharyngitis in childre... more Background
Group A streptococcus (GAS) accounts for 20% to 40% of cases of pharyngitis in children; the remaining cases are caused by viruses. Compared with throat culture, rapid antigen detection tests (RADTs) offer diagnosis at the point of care (within five to 10 minutes).

Objectives
To determine the diagnostic accuracy of RADTs for diagnosing GAS in children with pharyngitis. To assess the relative diagnostic accuracy of the two major types of RADTs (enzyme immunoassays (EIA) and optical immunoassays (OIA)) by indirect and direct comparison.

Search methods
We searched CENTRAL, MEDLINE, EMBASE,Web of Science, CDSR, DARE,MEDION and TRIP (January 1980 to July 2015). We also conducted related citations tracking via PubMed, handsearched reference lists of included studies and relevant review articles, and screened all articles citing included studies via Google Scholar.

Selection criteria
We included studies that compared RADT for GAS pharyngitis with throat culture on a blood agar plate in a microbiology laboratory in children seen in ambulatory care.

Data collection and analysis
Two review authors independently screened titles and abstracts for relevance, assessed full texts for inclusion, and carried out data extraction and quality assessment using the QUADAS-2 tool. We used bivariate meta-analysis to estimate summary sensitivity and specificity, and to investigate heterogeneity across studies. We compared the accuracy of EIA and OIA tests using indirect and direct
evidence.

Main results
We included 98 unique studies in the review (116 test evaluations; 101,121 participants).The overall methodological quality of included studies was poor, mainly because many studies were at high risk of bias regarding patient selection and the reference standard used (in 73% and 43% of test evaluations, respectively). In studies in which all participants underwent both RADT and throat culture (105 test evaluations; 58,244 participants; median prevalence of participants with GAS was 29.5%), RADT had a summary sensitivity of
85.6%; 95% confidence interval (CI) 83.3 to 87.6 and a summary specificity of 95.4%; 95% CI 94.5 to 96.2. There was substantial heterogeneity in sensitivity across studies; specificity was more stable. There was no evidence of a trade-off between sensitivity and specificity. Heterogeneity in accuracy was not explained by study-level characteristics such as whether an enrichment broth was used before plating, mean age and clinical severity of participants, and GAS prevalence. The sensitivity of EIA and OIA tests was comparable (summary sensitivity 85.4%versus 86.2%). Sensitivity analyses showed that summary estimates of sensitivity and specificity were stable in low risk of bias studies.

Authors’ conclusions
In a population of 1000 children with a GAS prevalence of 30%, 43 patients with GAS will be missed. Whether or not RADT can be used as a stand-alone test to rule out GAS will depend mainly on the epidemiological context. The sensitivity of EIA and OIA tests seems comparable. RADT specificity is sufficiently high to ensure against unnecessary use of antibiotics. Based on these results, we would expect that amongst 100 children with strep throat, 86 would be correctly detected with the rapid test while 14 would be missed and not receive antibiotic treatment.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Should we search Chinese biomedical databases when performing systematic reviews

Background: Chinese biomedical databases contain a large number of publications available to syst... more Background: Chinese biomedical databases contain a large number of publications available to systematic reviewers, but it is unclear whether they are used for synthesizing the available evidence.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Time to publication among completed diagnostic accuracy studies: associated with reported accuracy estimates

Background: Previous evaluations have documented that studies evaluating the effectiveness of the... more Background: Previous evaluations have documented that studies evaluating the effectiveness of therapeutic interventions are not always reported, and that those with statistically significant results are published more rapidly than those without. This can lead to reporting bias in systematic reviews and other literature syntheses. We evaluated whether diagnostic accuracy studies that report promising results about the performance of medical tests are also published more rapidly. Methods: We obtained all primary diagnostic accuracy studies included in meta-analyses of Medline-indexed systematic reviews that were published between September 2011 and January 2012. For each primary study, we extracted estimates of diagnostic accuracy (sensitivity, specificity, Youden's index), the completion date of participant recruitment, and the publication date. We calculated the time from completion to publication and assessed associations with reported accuracy estimates.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Updating standards for reporting diagnostic accuracy: the development of STARD 2015

Background: Although the number of reporting guidelines has grown rapidly, few have gone through ... more Background: Although the number of reporting guidelines has grown rapidly, few have gone through an updating process. The STARD statement (Standards for Reporting Diagnostic Accuracy), published in 2003 to help improve the transparency and completeness of reporting of diagnostic accuracy studies, was recently updated in a systematic way. Here, we describe the steps taken and a justification for the changes made.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Procalcitonin predicts response to beta-lactam treatment in hospitalized children with community-acquired pneumonia

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Cochran’s Q test was useful to assess heterogeneity in likelihood ratios in studies of diagnostic accuracy

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Should we search Chinese biomedical databases when performing systematic reviews?

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Selective testing strategies for diagnosing group A streptococcal infection in children with pharyngitis: a systematic review and prospective multicentre external validation study

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Effect of clinical spectrum, inoculum size and physician characteristics on sensitivity of a rapid antigen detection test for group A streptococcal pharyngitis

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Rapid-antigen detection tests for group A streptococcal pharyngitis: Revisiting false-positive results using polymerase chain reaction testing

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Spectrum and inoculum size effect of a rapid antigen detection test for group A streptococcus in children with pharyngitis

Bookmarks Related papers MentionsView impact

Research paper thumbnail of STARD 2015 guidelines for reporting diagnostic accuracy studies: explanation and elaboration

Diagnostic accuracy studies are, like other clinical studies, at risk of bias due to shortcomings... more Diagnostic accuracy studies are, like other clinical studies, at risk of bias due to shortcomings in design and conduct, and the results of a diagnostic accuracy study may not apply to other patient groups and settings. Readers of study reports need to be informed about study design and conduct, in sufficient detail to judge the trustworthiness and applicability of the study findings. The STARD statement (Standards for Reporting of Diagnostic Accuracy Studies) was developed to improve the completeness and transparency of reports of diagnostic accuracy studies. STARD contains a list of essential items that can be used as a checklist, by authors, reviewers and other readers, to ensure that a report of a diagnostic accuracy study contains the necessary information. STARD was recently updated. All updated STARD materials, including the checklist, are available at http:// www.equator-network.org/reporting-guidelines/stard. Here, we present the STARD 2015 explanation and elaboration document. Through commented examples of appropriate reporting, we clarify the rationale for each of the 30 items on the STARD 2015 checklist, and describe what is expected from authors in developing sufficiently informative study reports.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Rapid antigen detection test for group A streptococcus in children with pharyngitis (Review)

Background Group A streptococcus (GAS) accounts for 20% to 40% of cases of pharyngitis in childre... more Background
Group A streptococcus (GAS) accounts for 20% to 40% of cases of pharyngitis in children; the remaining cases are caused by viruses. Compared with throat culture, rapid antigen detection tests (RADTs) offer diagnosis at the point of care (within five to 10 minutes).

Objectives
To determine the diagnostic accuracy of RADTs for diagnosing GAS in children with pharyngitis. To assess the relative diagnostic accuracy of the two major types of RADTs (enzyme immunoassays (EIA) and optical immunoassays (OIA)) by indirect and direct comparison.

Search methods
We searched CENTRAL, MEDLINE, EMBASE,Web of Science, CDSR, DARE,MEDION and TRIP (January 1980 to July 2015). We also conducted related citations tracking via PubMed, handsearched reference lists of included studies and relevant review articles, and screened all articles citing included studies via Google Scholar.

Selection criteria
We included studies that compared RADT for GAS pharyngitis with throat culture on a blood agar plate in a microbiology laboratory in children seen in ambulatory care.

Data collection and analysis
Two review authors independently screened titles and abstracts for relevance, assessed full texts for inclusion, and carried out data extraction and quality assessment using the QUADAS-2 tool. We used bivariate meta-analysis to estimate summary sensitivity and specificity, and to investigate heterogeneity across studies. We compared the accuracy of EIA and OIA tests using indirect and direct
evidence.

Main results
We included 98 unique studies in the review (116 test evaluations; 101,121 participants).The overall methodological quality of included studies was poor, mainly because many studies were at high risk of bias regarding patient selection and the reference standard used (in 73% and 43% of test evaluations, respectively). In studies in which all participants underwent both RADT and throat culture (105 test evaluations; 58,244 participants; median prevalence of participants with GAS was 29.5%), RADT had a summary sensitivity of
85.6%; 95% confidence interval (CI) 83.3 to 87.6 and a summary specificity of 95.4%; 95% CI 94.5 to 96.2. There was substantial heterogeneity in sensitivity across studies; specificity was more stable. There was no evidence of a trade-off between sensitivity and specificity. Heterogeneity in accuracy was not explained by study-level characteristics such as whether an enrichment broth was used before plating, mean age and clinical severity of participants, and GAS prevalence. The sensitivity of EIA and OIA tests was comparable (summary sensitivity 85.4%versus 86.2%). Sensitivity analyses showed that summary estimates of sensitivity and specificity were stable in low risk of bias studies.

Authors’ conclusions
In a population of 1000 children with a GAS prevalence of 30%, 43 patients with GAS will be missed. Whether or not RADT can be used as a stand-alone test to rule out GAS will depend mainly on the epidemiological context. The sensitivity of EIA and OIA tests seems comparable. RADT specificity is sufficiently high to ensure against unnecessary use of antibiotics. Based on these results, we would expect that amongst 100 children with strep throat, 86 would be correctly detected with the rapid test while 14 would be missed and not receive antibiotic treatment.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Should we search Chinese biomedical databases when performing systematic reviews

Background: Chinese biomedical databases contain a large number of publications available to syst... more Background: Chinese biomedical databases contain a large number of publications available to systematic reviewers, but it is unclear whether they are used for synthesizing the available evidence.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Time to publication among completed diagnostic accuracy studies: associated with reported accuracy estimates

Background: Previous evaluations have documented that studies evaluating the effectiveness of the... more Background: Previous evaluations have documented that studies evaluating the effectiveness of therapeutic interventions are not always reported, and that those with statistically significant results are published more rapidly than those without. This can lead to reporting bias in systematic reviews and other literature syntheses. We evaluated whether diagnostic accuracy studies that report promising results about the performance of medical tests are also published more rapidly. Methods: We obtained all primary diagnostic accuracy studies included in meta-analyses of Medline-indexed systematic reviews that were published between September 2011 and January 2012. For each primary study, we extracted estimates of diagnostic accuracy (sensitivity, specificity, Youden's index), the completion date of participant recruitment, and the publication date. We calculated the time from completion to publication and assessed associations with reported accuracy estimates.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Updating standards for reporting diagnostic accuracy: the development of STARD 2015

Background: Although the number of reporting guidelines has grown rapidly, few have gone through ... more Background: Although the number of reporting guidelines has grown rapidly, few have gone through an updating process. The STARD statement (Standards for Reporting Diagnostic Accuracy), published in 2003 to help improve the transparency and completeness of reporting of diagnostic accuracy studies, was recently updated in a systematic way. Here, we describe the steps taken and a justification for the changes made.

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Procalcitonin predicts response to beta-lactam treatment in hospitalized children with community-acquired pneumonia

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Cochran’s Q test was useful to assess heterogeneity in likelihood ratios in studies of diagnostic accuracy

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Should we search Chinese biomedical databases when performing systematic reviews?

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Selective testing strategies for diagnosing group A streptococcal infection in children with pharyngitis: a systematic review and prospective multicentre external validation study

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Effect of clinical spectrum, inoculum size and physician characteristics on sensitivity of a rapid antigen detection test for group A streptococcal pharyngitis

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Rapid-antigen detection tests for group A streptococcal pharyngitis: Revisiting false-positive results using polymerase chain reaction testing

Bookmarks Related papers MentionsView impact

Research paper thumbnail of Spectrum and inoculum size effect of a rapid antigen detection test for group A streptococcus in children with pharyngitis

Bookmarks Related papers MentionsView impact