Dirk Steinke | University of Guelph (original) (raw)

Papers by Dirk Steinke

Marine Biodiversity, 2011

Your article is protected by copyright and all rights are held exclusively by Senckenberg, Gesell... more Your article is protected by copyright and all rights are held exclusively by Senckenberg, Gesellschaft für Naturforschung and Springer. This e-offprint is for personal use only and shall not be self-archived in electronic repositories. If you wish to self-archive your work, please use the accepted author's version for posting to your own website or your institution's repository. You may further deposit the accepted author's version on a funder's repository at a funder's request, provided it is not made publicly available until 12 months after publication.

BMC ecology, 2013

Background: Coleoptera is the most diverse order of insects (>300,000 described species), but its... more Background: Coleoptera is the most diverse order of insects (>300,000 described species), but its richness diminishes at increasing latitudes (e.g., ca. 7400 species recorded in Canada), particularly of phytophagous and detritivorous species. However, incomplete sampling of northern habitats and a lack of taxonomic study of some families limits our understanding of biodiversity patterns in the Coleoptera. We conducted an intensive biodiversity survey from 2006-2010 at Churchill, Manitoba, Canada in order to quantify beetle species diversity in this model region, and to prepare a barcode library of beetles for sub-arctic biodiversity and ecological research. We employed DNA barcoding to provide estimates of provisional species diversity, including for families currently lacking taxonomic expertise, and to examine the guild structure, habitat distribution, and biogeography of beetles in the Churchill region. Results: We obtained DNA barcodes from 3203 specimens representing 302 species or provisional species (the latter quantitatively defined on the basis of Molecular Operational Taxonomic Units, MOTUs) in 31 families of Coleoptera. Of the 184 taxa identified to the level of a Linnaean species name, 170 (92.4%) corresponded to a single MOTU, four (2.2%) represented closely related sibling species pairs within a single MOTU, and ten (5.4%) were divided into two or more MOTUs suggestive of cryptic species. The most diverse families were the Dytiscidae (63 spp.), Staphylinidae (54 spp.), and Carabidae (52 spp.), although the accumulation curve for Staphylinidae suggests that considerable additional diversity remains to be sampled in this family. Most of the species present are predatory, with phytophagous, mycophagous, and saprophagous guilds being represented by fewer species. Most named species of Carabidae and Dytiscidae showed a significant bias toward open habitats (wet or dry). Forest habitats, particularly dry boreal forest, although limited in extent in the region, were undersampled.

Biodiversity Data Journal, 2015

Three hundred and fifty specimens of the endemic Southern Ocean octopus genus Pareledone, were se... more Three hundred and fifty specimens of the endemic Southern Ocean octopus genus Pareledone, were sequenced for the barcoding gene COI. Geographic coverage comprised the South Shetland Islands, the Ross Sea, Adé lie Land, George V Land, the Weddell Sea, under the site of the former Larsen B ice shelf, Prydz Bay, the South Orkney Islands and the Amundsen Sea. The greatest number of specimens was captured at the three first-mentioned localities. At least 11 species were represented in the samples and the analyses revealed cryptic species. Six species were found to have extended distributions. Circumpolarity is supported for at least one species. Evidence is presented for a barrier to gene flow to the west of the Antarctic Peninsula, with haplotypes of P. aequipapillae becoming progressively more diverse in a clockwise direction from the South Shetland Islands to the Amundsen Sea. This pattern is akin to that seen in ring species, although we suggest that comparatively warm bottom water acts as a physical barrier preventing completion of the ring.

Polar Biology, 2011

Coordinated, circum-Antarctic sampling expeditions during International Polar Year 2008/09 have g... more Coordinated, circum-Antarctic sampling expeditions during International Polar Year 2008/09 have given access to comprehensive collections suitable for DNA barcoding. Collaborations between the Census of Antarctic Marine Life (CAML), the Marine Barcode of Life project and the Canadian Centre for DNA Barcoding have enabled the Antarctic scientific community to initiate large-scale DNA barcoding projects to record the genetic diversity of Antarctic

DNA barcoding revealed four well-supported clades among amphipod specimens that keyed out to Epim... more DNA barcoding revealed four well-supported clades among amphipod specimens that keyed out to Epimeria georgiana Schellenberg, 1931, three clades with specimens from the southern Scotia Arc and one clade with specimens from the Weddell Sea. Detailed morphological investigations of sequenced specimens were conducted, through light and scanning electron microscopy. High magnification (500-2,000 fold) revealed features such as comb-scales on the first antenna and trich bearing pits on the fourth coxal plate to be similar for all specimens in the four clades. Consistent microstructure character differences in the Weddell Sea specimens combined with high genetic distances (COI divergence>20%) allowed the description of Epimeria angelikae, a species new to science. Specimens of E. georgiana in the other three COI clades from the Scotia Arc were morphologically indistinguishable. Representative specimens of clade A are also illustrated in detail. Our results on the high genetic divergences in epimeriid amphipods support the theory of the southern Scotia Arc being a centre of Antarctic diversification.

The Dumont d'Urville Sea (East Antarctic region) has been less investigated for DNA barcoding and... more The Dumont d'Urville Sea (East Antarctic region) has been less investigated for DNA barcoding and molecular taxonomy than other parts of the Southern Ocean, such as the Ross Sea and the Antarctic Peninsula. The Collaborative East Antarctic MARine Census (CEAMARC) took place in this area during the austral summer of 2007e2008. The Australian vessel RSV Aurora Australis collected very diverse samples of demersal and benthic organisms. The specimens were sorted centrally, and then distributed to taxonomic experts for molecular and morphological taxonomy and identification, especially barcoding. The COI sequences generated from CEAMARC material provide a sizeable proportion of the Census of Antarctic Marine Life barcodes although the studies are still ongoing, and represent the only source of sequences for a number of species. Barcoding appears to be a valuable method for identification within most groups, despite low divergences and haplotype sharing in a few species, and it is also useful as a preliminary taxonomic exploration method. Several new species are being described. CEAMARC samples have already provided new material for phylogeographic and phylogenetic studies in cephalopods, pycnogonids, teleost fish, crinoids and sea urchins, helping these studies to provide a better insight in the patterns of evolution in the Southern Ocean.

The crustacean genus Rhachotropis has a worldwide distribution and amongst the largest bathymetri... more The crustacean genus Rhachotropis has a worldwide distribution and amongst the largest bathymetric range known from any amphipod genus. DNA barcoding of new material from around New Zealand and the Ross Sea indicated depth-related biogeographic patterns. New Zealand Rhachotropis do not form a monophyletic clade. Species from bathyal depths on the Chatham Rise, east of New Zealand, show lower sequence divergence to bathyal species from California and the Arctic than to abyssal New Zealand species. Species sampled in the Kermadec Trench, north of New Zealand below 5000 m, seem to be more closely related to Ross Sea abyssal species than to the New Zealand shelf species. The worldwide geographic and bathymetric distribution for all Rhachotropis species is presented here. Depth may have a greater influence on phylogeny than geographic distance. Molecular and morphological investigations of Rhachotropis specimens from the Chatham Rise, New Zealand revealed a species new to science which is described in detail, including scanning electron microscopy. This increases the number of described species of Rhachotropis to 60 worldwide.

PloS one, 2010

The shelled pteropod (sea butterfly) Limacina helicina is currently recognised as a species compl... more The shelled pteropod (sea butterfly) Limacina helicina is currently recognised as a species complex comprising two sub-species and at least five “forma”. However, at the species level it is considered to be bipolar, occurring in both the Arctic and Antarctic oceans. Due to its aragonite shell ...

Marine Biodiversity, 2011

Your article is protected by copyright and all rights are held exclusively by Senckenberg, Gesell... more Your article is protected by copyright and all rights are held exclusively by Senckenberg, Gesellschaft für Naturforschung and Springer. This e-offprint is for personal use only and shall not be self-archived in electronic repositories. If you wish to self-archive your work, please use the accepted author's version for posting to your own website or your institution's repository. You may further deposit the accepted author's version on a funder's repository at a funder's request, provided it is not made publicly available until 12 months after publication.

BMC ecology, 2013

Background: Coleoptera is the most diverse order of insects (>300,000 described species), but its... more Background: Coleoptera is the most diverse order of insects (>300,000 described species), but its richness diminishes at increasing latitudes (e.g., ca. 7400 species recorded in Canada), particularly of phytophagous and detritivorous species. However, incomplete sampling of northern habitats and a lack of taxonomic study of some families limits our understanding of biodiversity patterns in the Coleoptera. We conducted an intensive biodiversity survey from 2006-2010 at Churchill, Manitoba, Canada in order to quantify beetle species diversity in this model region, and to prepare a barcode library of beetles for sub-arctic biodiversity and ecological research. We employed DNA barcoding to provide estimates of provisional species diversity, including for families currently lacking taxonomic expertise, and to examine the guild structure, habitat distribution, and biogeography of beetles in the Churchill region. Results: We obtained DNA barcodes from 3203 specimens representing 302 species or provisional species (the latter quantitatively defined on the basis of Molecular Operational Taxonomic Units, MOTUs) in 31 families of Coleoptera. Of the 184 taxa identified to the level of a Linnaean species name, 170 (92.4%) corresponded to a single MOTU, four (2.2%) represented closely related sibling species pairs within a single MOTU, and ten (5.4%) were divided into two or more MOTUs suggestive of cryptic species. The most diverse families were the Dytiscidae (63 spp.), Staphylinidae (54 spp.), and Carabidae (52 spp.), although the accumulation curve for Staphylinidae suggests that considerable additional diversity remains to be sampled in this family. Most of the species present are predatory, with phytophagous, mycophagous, and saprophagous guilds being represented by fewer species. Most named species of Carabidae and Dytiscidae showed a significant bias toward open habitats (wet or dry). Forest habitats, particularly dry boreal forest, although limited in extent in the region, were undersampled.

Biodiversity Data Journal, 2015

Three hundred and fifty specimens of the endemic Southern Ocean octopus genus Pareledone, were se... more Three hundred and fifty specimens of the endemic Southern Ocean octopus genus Pareledone, were sequenced for the barcoding gene COI. Geographic coverage comprised the South Shetland Islands, the Ross Sea, Adé lie Land, George V Land, the Weddell Sea, under the site of the former Larsen B ice shelf, Prydz Bay, the South Orkney Islands and the Amundsen Sea. The greatest number of specimens was captured at the three first-mentioned localities. At least 11 species were represented in the samples and the analyses revealed cryptic species. Six species were found to have extended distributions. Circumpolarity is supported for at least one species. Evidence is presented for a barrier to gene flow to the west of the Antarctic Peninsula, with haplotypes of P. aequipapillae becoming progressively more diverse in a clockwise direction from the South Shetland Islands to the Amundsen Sea. This pattern is akin to that seen in ring species, although we suggest that comparatively warm bottom water acts as a physical barrier preventing completion of the ring.

Polar Biology, 2011

Coordinated, circum-Antarctic sampling expeditions during International Polar Year 2008/09 have g... more Coordinated, circum-Antarctic sampling expeditions during International Polar Year 2008/09 have given access to comprehensive collections suitable for DNA barcoding. Collaborations between the Census of Antarctic Marine Life (CAML), the Marine Barcode of Life project and the Canadian Centre for DNA Barcoding have enabled the Antarctic scientific community to initiate large-scale DNA barcoding projects to record the genetic diversity of Antarctic

DNA barcoding revealed four well-supported clades among amphipod specimens that keyed out to Epim... more DNA barcoding revealed four well-supported clades among amphipod specimens that keyed out to Epimeria georgiana Schellenberg, 1931, three clades with specimens from the southern Scotia Arc and one clade with specimens from the Weddell Sea. Detailed morphological investigations of sequenced specimens were conducted, through light and scanning electron microscopy. High magnification (500-2,000 fold) revealed features such as comb-scales on the first antenna and trich bearing pits on the fourth coxal plate to be similar for all specimens in the four clades. Consistent microstructure character differences in the Weddell Sea specimens combined with high genetic distances (COI divergence>20%) allowed the description of Epimeria angelikae, a species new to science. Specimens of E. georgiana in the other three COI clades from the Scotia Arc were morphologically indistinguishable. Representative specimens of clade A are also illustrated in detail. Our results on the high genetic divergences in epimeriid amphipods support the theory of the southern Scotia Arc being a centre of Antarctic diversification.

The Dumont d'Urville Sea (East Antarctic region) has been less investigated for DNA barcoding and... more The Dumont d'Urville Sea (East Antarctic region) has been less investigated for DNA barcoding and molecular taxonomy than other parts of the Southern Ocean, such as the Ross Sea and the Antarctic Peninsula. The Collaborative East Antarctic MARine Census (CEAMARC) took place in this area during the austral summer of 2007e2008. The Australian vessel RSV Aurora Australis collected very diverse samples of demersal and benthic organisms. The specimens were sorted centrally, and then distributed to taxonomic experts for molecular and morphological taxonomy and identification, especially barcoding. The COI sequences generated from CEAMARC material provide a sizeable proportion of the Census of Antarctic Marine Life barcodes although the studies are still ongoing, and represent the only source of sequences for a number of species. Barcoding appears to be a valuable method for identification within most groups, despite low divergences and haplotype sharing in a few species, and it is also useful as a preliminary taxonomic exploration method. Several new species are being described. CEAMARC samples have already provided new material for phylogeographic and phylogenetic studies in cephalopods, pycnogonids, teleost fish, crinoids and sea urchins, helping these studies to provide a better insight in the patterns of evolution in the Southern Ocean.

The crustacean genus Rhachotropis has a worldwide distribution and amongst the largest bathymetri... more The crustacean genus Rhachotropis has a worldwide distribution and amongst the largest bathymetric range known from any amphipod genus. DNA barcoding of new material from around New Zealand and the Ross Sea indicated depth-related biogeographic patterns. New Zealand Rhachotropis do not form a monophyletic clade. Species from bathyal depths on the Chatham Rise, east of New Zealand, show lower sequence divergence to bathyal species from California and the Arctic than to abyssal New Zealand species. Species sampled in the Kermadec Trench, north of New Zealand below 5000 m, seem to be more closely related to Ross Sea abyssal species than to the New Zealand shelf species. The worldwide geographic and bathymetric distribution for all Rhachotropis species is presented here. Depth may have a greater influence on phylogeny than geographic distance. Molecular and morphological investigations of Rhachotropis specimens from the Chatham Rise, New Zealand revealed a species new to science which is described in detail, including scanning electron microscopy. This increases the number of described species of Rhachotropis to 60 worldwide.

PloS one, 2010

The shelled pteropod (sea butterfly) Limacina helicina is currently recognised as a species compl... more The shelled pteropod (sea butterfly) Limacina helicina is currently recognised as a species complex comprising two sub-species and at least five “forma”. However, at the species level it is considered to be bipolar, occurring in both the Arctic and Antarctic oceans. Due to its aragonite shell ...