Network Analysis for MS-based Proteomics Experiments (original) (raw)
This package provides a suite of functions to query various network databases, filter queries & results, and visualize networks.
Installation Instructions
To install this package on bioconductor, run the following command:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MSstatsBioNet")
You can install the development version of this package through Github:
devtools::install_github("Vitek-Lab/MSstatsConvert", build_vignettes = TRUE)
License
This package is distributed under the Artistic-2.0 license. However, its dependencies may have different licenses.
Notably, INDRA is distributed under the BSD 2-Clause license. Furthermore, INDRA’s knowledge sources may have different licenses for commercial applications. Please refer to the INDRA README for more information on its knowledge sources and their associated licenses.
Databases Supported
- INDRA
Filtering Options Supported
- P-Value Filter
Visualization Options Supported
- Cytoscape Desktop