Faculty of 1000 evaluation for A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins (original) (raw)

A Combinatorial Amino Acid Code for RNA Recognition by Pentatricopeptide Repeat Proteins

Alice Barkan

PLoS Genetics, 2012

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The solution structure of the pentatricopeptide repeat protein PPR10 upon binding atpH RNA

Will Stanley

Nucleic Acids Research, 2015

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Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein

Gadi Schuster

Proceedings of the National Academy of Sciences, 2011

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Chloroplast RNA-binding and pentatricopeptide repeat proteins

Gadi Schuster

Biochemical Society Transactions, 2004

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Structural basis for RNA recognition by a dimeric PPR-protein complex

Jiyuan Ke

Nature Structural & Molecular Biology, 2013

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Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins

Hilal Kazan

Nature Biotechnology, 2009

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Exploring the code for specific binding by the RNA recognition motif domain

Markus Blatter

2013

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An artificial PPR scaffold for programmable RNA recognition

Stéphane Thore

Nature Communications, 2014

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Elucidation of the RNA Recognition Code for Pentatricopeptide Repeat Proteins Involved in Organelle RNA Editing in Plants

Takashi Hirayama

PLoS ONE, 2013

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Sequence-specific binding of a chloroplast pentatricopeptide repeat protein to its native group II intron ligand

Tiffany Kroeger, R. Williams-Carrier

RNA, 2008

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Prediction of a new class of RNA recognition motif

Sheena Villegas

2010

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Expanding the repertoire of human tandem repeat RNA-binding proteins

Matías Sebastian Carletti

bioRxiv (Cold Spring Harbor Laboratory), 2022

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The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression

Cyril Dominguez, Christophe Maris

FEBS Journal, 2005

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An overview of pentatricopeptide repeat proteins and their applications

Sam Manna

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The design and structural characterization of a synthetic pentatricopeptide repeat protein

Will Stanley

Acta crystallographica. Section D, Biological crystallography, 2015

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RNA recognition by the joint action of two nucleolin RNA-binding domains: genetic analysis and structural modeling

Monique Erard, Amalric Francois

The EMBO Journal, 1997

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The Restorer-of-fertility-like 2 pentatricopeptide repeat protein and RNase P are required for the processing of mitochondrial orf291 RNA in Arabidopsis

Nobuya Koizuka

The Plant journal : for cell and molecular biology, 2016

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Pentatricopeptide repeat (PPR) proteins as sequence-specificity factors in post-transcriptional processes in organelles

E. Delannoy

Biochemical Society Transactions, 2007

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Two RNA-binding Domains Determine the RNA-binding Specificity of Nucleolin

Monique Erard

Journal of Biological Chemistry, 1997

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Site-specific binding of a PPR protein defines and stabilizes 5′ and 3′ mRNA termini in chloroplasts

Alice Barkan

The EMBO Journal, 2009

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Deciphering the RRM-RNA recognition code: A computational analysis

Wim Vranken

PLOS Computational Biology

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Prevalent RNA recognition motif duplication in the human genome

Yihsuan Tsai

RNA, 2014

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Structural basis for recognition of the AGNN tetraloop RNA fold by the double-stranded RNA-binding domain of Rnt1p RNase III

Guillaume Chanfreau

Proceedings of The National Academy of Sciences, 2004

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Two different combinations of RNA-binding domains determine the RNA binding specificity of nucleolin

Francois Amalric

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The identification and functional annotation of RNA structures conserved in vertebrates

Stefan Seemann

Genome research, 2017

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Exploring the suitability of RanBP2-type Zinc Fingers for RNA-binding protein design

Alain Brans

Scientific Reports

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Identification of a novel pentatricopeptide repeat subfamily with a C-terminal domain of bacterial origin acquired via ancient horizontal gene transfer

Sam Manna

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A divergent Pumilio repeat protein family for pre-rRNA processing and mRNA localization

Susan Baserga

Proceedings of the National Academy of Sciences, 2014

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A Pentatricopeptide Repeat Protein in the Plasmodium apicoplast is essential and shows sequence-specific RNA binding

Joanna Hicks

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Hidden specificity in an apparently nonspecific RNA-binding protein

Ulf-Peter Guenther

Nature, 2013

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RNA-binding proteins of mammalian mitochondria

Linda Spremulli

Mitochondrion, 2003

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An essential pentatricopeptide repeat protein in the apicomplexan remnant chloroplast

Joanna Hicks

Cellular Microbiology

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HCF152, an Arabidopsis RNA Binding Pentatricopeptide Repeat Protein Involved in the Processing of Chloroplast psbB-psbT-psbH-petB-petD RNAs

Gadi Schuster

THE PLANT CELL ONLINE, 2003

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Structural Basis of Single-Stranded RNA Recognition

Ana Messias

Accounts of Chemical Research, 2004

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Recognition Modes of RNA Tetraloops And Tetraloop-Like Motifs By RNA Binding Proteins

J. Rice, Roopa Thapar

Wiley Interdisciplinary Reviews: RNA, 2013

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