RNA pseudoknots (original) (raw)

A new principle of RNA folding based on pseudoknotting

Krijn Rietveld

Nucleic Acids Research, 1985

View PDFchevron_right

Viral RNA pseudoknots: versatile motifs in gene expression and replication

Simon Penel

Nature Reviews Microbiology, 2007

View PDFchevron_right

Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting

Carla Theimer

Journal of Molecular Biology, 2000

View PDFchevron_right

Sequence-structure relations of pseudoknot RNA

Linda Li

BMC Bioinformatics, 2009

View PDFchevron_right

Coordination among tertiary base pairs results in an efficient frameshift-stimulating RNA pseudoknot

Jin-der Wen

Nucleic Acids Research

View PDFchevron_right

Diverse RNA pseudoknots exist for short stems only

Eugene F Baulin

Mathematical Biology and Bioinformatics, 2018

View PDFchevron_right

A phylogenetically conserved hairpin-type 3' untranslated region pseudoknot functions in coronavirus RNA replication

Ruey-Yi Chang

Journal of virology, 1999

View PDFchevron_right

An RNA folding method capable of identifying pseudoknots and base triples

Gary Stormo

Bioinformatics, 1998

View PDFchevron_right

Local Structural and Environmental Factors Define the Efficiency of an RNA Pseudoknot Involved in Programmed Ribosomal Frameshift Process

Asmita Gupta, Manju Bansal

View PDFchevron_right

Crumple: A Method for Complete Enumeration of All Possible Pseudoknot-Free RNA Secondary Structures

Susan Schroeder

PLoS ONE, 2012

View PDFchevron_right

A Phylogenetically Conserved Hairpin-Type 39 Untranslated Region Pseudoknot Functions in Coronavirus RNA Replication

Ruey-Yi Chang

1999

View PDFchevron_right

Equilibrium unfolding pathway of an H-type RNA pseudoknot which promotes programmed −1 ribosomal frameshifting

Carla Theimer

Journal of Molecular Biology, 1999

View PDFchevron_right

Equilibrium unfolding pathway of an H-type RNA pseudoknot which promotes programmed −1 ribosomal frameshifting 1 1Edited by D. E. Draper

Carla Theimer

Journal of Molecular Biology, 1999

View PDFchevron_right

Modular RNA architecture revealed by computational analysis of existing pseudoknots and ribosomal RNAs

Tamar Schlick

Nucleic Acids Research, 2005

View PDFchevron_right

RNA folding: beyond Watson–Crick pairs

Eric Westhof

Structure, 2000

View PDFchevron_right

Folding a stable RNA pseudoknot through rearrangement of two hairpin structures

Jin-der Wen

Nucleic Acids Research, 2014

View PDFchevron_right

Protein unties the pseudoknot: S1-mediated unfolding of RNA higher order structure

Nils Walter

Nucleic Acids Research

View PDFchevron_right

Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: A mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site

Norma Wills

RNA, 2002

View PDFchevron_right

Classifying RNA pseudoknotted structures

Baharak Rastegari

Theoretical Computer Science, 2004

View PDFchevron_right

Five pseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosak virus RNA

Alex Abraham

Nucleic Acids Research, 1985

View PDFchevron_right

Characterization of the Mechanical Unfolding of RNA Pseudoknots

carlos bustamante

Journal of Molecular Biology, 2008

View PDFchevron_right

Structure and folding of a rare, natural kink turn in RNA with an A*A pair at the 2b*2n position

Kersten Schroeder

RNA, 2012

View PDFchevron_right

A phylogenetically conserved sequence within viral 3' untranslated RNA pseudoknots regulates translation

Robert L Tanguay

Molecular and cellular biology, 1993

View PDFchevron_right

Monovalent ions modulate the flux through multiple folding pathways of an RNA pseudoknot

SAROJ BARAL

Proceedings of the National Academy of Sciences of the United States of America, 2018

View PDFchevron_right

Reverse Watson-Crick purine-purine base pairs — the Sharp-turn motif and other structural consequences in functional RNAs

Abhijit Mitra

View PDFchevron_right

Quantum chemical studies of structures and binding in noncanonical RNA base pairs: the trans Watson-Crick: Watson-Crick family.

Dr. sitansh sharma

… structure & dynamics, 2008

View PDFchevron_right

Triplex structures in an RNA pseudoknot enhance mechanical stability and increase efficiency of -1 ribosomal frameshifting

Ming-Yuan Chou

Proceedings of the National Academy of Sciences of the United States of America, 2009

View PDFchevron_right

Topology and prediction of RNA pseudoknots

Robert Penner

Bioinformatics, 2011

View PDFchevron_right

Mutational analysis of the RNA pseudoknot involved in efficient ribosomal frameshifting in simian retrovirus-1

Dae Dong Sung

Nucleic Acids Research, 1998

View PDFchevron_right

The functional exchangeability of pk- and k-turns in RNA structure

Peter Daldrop

RNA Biology, 2013

View PDFchevron_right