A quantitative understanding of lac repressor’s binding specificity and flexibility (original) (raw)

High-Resolution Specificity from DNA Sequencing Highlights Alternative Modes of Lac Repressor Binding

Gary Stormo

Genetics, 2014

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Altered Specificity in DNA Binding by the lac Repressor: A Mutant lac Headpiece that Mimics the gal Repressor

Roberto Salinas

ChemBioChem, 2005

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AlloRep: a repository of sequence, structural and mutagenesis data for the LacI/GalR transcription regulators

Daniel Parente

Journal of molecular biology, 2015

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Subdividing Repressor Function: DNA Binding Affinity, Selectivity, and Allostery Can Be Altered by Amino Acid Substitution of Nonconserved Residues in a LacI/GalR Homologue †

Hongli Zhan

Biochemistry, 2008

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Exploring the sequence-function relationship in transcriptional regulation by the lac O1 operator

Ramesh Jha

FEBS Journal, 2012

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Perturbation from a Distance: Mutations that Alter LacI Function through Long-Range Effects †

Hongli Zhan

Biochemistry, 2003

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Specificity and Affinity of Lac Repressor for the Auxiliary Operators O2 and O3 Are Explained by the Structures of Their Protein–DNA Complexes

Hans Wienk

Journal of Molecular Biology, 2009

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Lac repressor genetic map in real space

Jeffrey Miller

Trends in Biochemical Sciences, 1997

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Plasticity in protein-DNA recognition: lac repressor interacts with its natural operator O1 through alternative conformations of its DNA-binding domain

Roberto Salinas

The EMBO Journal, 2002

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Modified nucleotides reveal the indirect role of the central base pairs in stabilizing the lac repressor-operator complex

Philip A Gottlieb

Nucleic Acids Research, 1995

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Functional consequences of exchanging domains between LacI and PurR are mediated by the intervening linker sequence

Susan Egan

Proteins: Structure, Function, and Bioinformatics, 2007

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Weak operator binding enhances simulated lac repressor-mediated DNA looping

Andrew Colasanti

Biopolymers, 2013

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Flexibility and Disorder in Gene Regulation: LacI/GalR and Hox Proteins

Sarah Bondos

Journal of Biological Chemistry, 2015

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Assignment of the 1H-NMR spectrum of a lac repressor headpiece-operator complex in H2O and identification of NOEs. Consequences for protein-DNA interaction

Rolf Boelens

European Journal of Biochemistry, 1990

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LAC REPRESSOR: A genetic and nuclear magnetic resonance study of structure and function

Ponzy Lu

Biophysical Journal, 1980

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Molecular parameters characterizing the interaction of Escherichia coli lac repressor with non-operator DNA and inducer

Peter Von Hipel

Biochemistry, 1977

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Orientation of the Lac repressor DNA binding domain in complex with the left lac operator half site characterized by affinity cleaving

Richard Ebright

Nucleic Acids Research, 1991

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Analysis of in-vivo LacR-mediated gene repression based on the mechanics of DNA looping

Stephen Levene

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Local Gene Regulation Details a Recognition Code within the LacI Transcriptional Factor Family

Francisco Camas

PLOS Computational Biology, 2010

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Repressor--operator interaction in the lac operon. III. Nuclear magnetic resonance observations with altered amino-terminal DNA binding domains

Harry Nick

Journal of Molecular Biology, 1982

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Interconvertible Lac Repressor–DNA Loops Revealed by Single-Molecule Experiments

Martin Guthold

PLoS Biology, 2008

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The lac operator is DNA

W. Gilbert

Proceedings of the National Academy of Sciences, 1967

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Repressor-operator interaction in the lac operon

Harry Nick

Journal of Molecular Biology, 1982

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Lac Repressor: a proton magnetic resonance look at the deoxyribonucleic acid binding fragment

Ponzy Lu

Biochemistry, 1981

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Comparative genomics and evolution of regulons of the LacI-family transcription factors

Aleksandra Rakhmaninova

Frontiers in Microbiology, 2014

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A single mutation in the core domain of the lac repressor reduces leakiness

Sean Devenish, Willem Dijkman

Microbial Cell Factories, 2013

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FRET studies of a landscape of Lac repressor-mediated DNA loops

sachin goyal

Nucleic Acids Research, 2012

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A family of bacterial regulators homologous to Gal and Lac repressors

S. Adhya

Journal of Biological Chemistry, 1992

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Represser-operator interaction in the lac operon

Ponzy Lu

Journal of Molecular Biology, 1982

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Genetic assignment of resonances in the NMR spectrum of a protein: lac repressor

Ponzy Lu

Proceedings of the National Academy of Sciences, 1981

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