Multidimensional In Vivo Hazard Assessment Using Zebrafish (original) (raw)
Related papers
Toxicological Sciences, 2010
Large-scale toxicogenomic screening approaches offer great promise for generating a bias-free system-wide view of toxicological effects and modes-of-action of chemicals and ecotoxicants. However, early applications of microarray technology have identified relatively small groups of responding genes with which to define new targets for analysis by conventional means. We have trialled a more intensive approach to the design and interpretation of array experiments incorporating a balanced interwoven ANOVA design with higher levels of biological replication, a more thorough analysis of errors and false discovery rates, and an analysis of response patterns using gene network models. Zebrafish embryos were exposed from 1.5 h post-fertilization for 72 h to ecotoxicants representing different classes-2,4-dichlorophenol, 3,4-dichloroaniline, pentachlorophenol, and cadmium chloride-at low concentrations producing a developmental disturbance to 10% of embryos and half of this dose. Extracted whole embryo RNA was then analyzed on microarrays. Analysis revealed responses of 3000-5000 genes, which is 10-1000 times greater than previously reported, with significance at lower levels of fold change. Some gene responses were common to multiple toxicants, and others were restricted to just one or two toxicants. The gene expression profiles for the different toxicants were distinctive, and analysis using network-based models provided a high level of detail of affected processes, some of which were novel. This approach provides a more highly refined view of toxic effects, from which meaningful patterns of response can be discerned and related to functional deficits and from which more reliable indicators of toxicological effect can be predicted.
Zebrafish: A Marvel of High-Throughput Biology for 21st Century Toxicology
Current Environmental Health Reports, 2014
The evolutionary conservation of genomic, biochemical, and developmental features between zebrafish and humans is gradually coming into focus, with the end result that the zebrafish embryo model has emerged as a powerful tool for uncovering the effects of environmental exposures on a multitude of biological processes with direct relevance to human health. In this review, we highlight advances in automation, high-throughput screening, and analysis that leverage the power of the zebrafish embryo model for unparalleled advances in our understanding of how chemicals in our environment affect our health and wellbeing.
PLOS ONE
Zebrafish have become an important alternative model for characterizing chemical bioactivity, partly due to the efficiency at which systematic, high-dimensional data can be generated. However, these new data present analytical challenges associated with scale and diversity. We developed a novel, robust statistical approach to characterize chemical-elicited effects in behavioral data from high-throughput screening (HTS) of all 1,060 Toxicity Forecaster (ToxCast™) chemicals across 5 concentrations at 120 hours post-fertilization (hpf). Taking advantage of the immense scale of data for a global view, we show that this new approach reduces bias introduced by extreme values yet allows for diverse response patterns that confound the application of traditional statistics. We have also shown that, as a summary measure of response for local tests of chemical-associated behavioral effects, it achieves a significant reduction in coefficient of variation compared to many traditional statistical modeling methods. This effective increase in signal-to-noise ratio augments statistical power and is observed across experimental periods (light/dark conditions) that display varied distributional response patterns. Finally, we integrated results with data from concomitant developmental endpoint measurements to show that appropriate statistical handling of HTS behavioral data can add important biological context that informs mechanistic hypotheses.
Environmental Science and Pollution Research, 2008
Background, aim, and scope The use of fish embryos is not regulated by current legislations on animal welfare and is therefore considered as a refinement, if not replacement of animal experiments. Fish embryos represent an attractive model for environmental risk assessment of chemicals since they offer the possibility to perform small-scale, high-throughput analyses. Main features Beyond their application for determining the acute toxicity, fish embryos are also excellent models for studies aimed at the understanding of toxic mechanisms and the indication of possible adverse and long-term effects. Therefore, we have reviewed the scientific literature in order to indicate alternative applications of the fish embryo model with focus on embryos of the zebrafish. Results and discussions The analysis of the mode of action is important for the risk assessment of environmental chemicals and can assist in indicating adverse and long-term effects. Toxicogenomics present a promising approach to unravel the potential mechanisms. Therefore, we present examples of the use of zebrafish embryos to study the effect of chemicals on gene and protein patterns, and the potential implications of differential expression for toxicity. The possible application of other methods, such as kinase arrays or metabolomic profiling, is also highlighted. Furthermore, we show examples of toxicokinetic studies (bioconcentration, ABC transporters) and discuss limitations that might be caused by the potential barrier function of the chorion. Finally, we demonstrate that biomarkers of endocrine disruption, immune modulation, genotoxicity or chronic toxicity could be used as indicators or predictors of sub-acute and long-term effects. Conclusions The zebrafish embryo represents a model with an impressive range of possible applications in environmental sciences. Particularly, the adaptation of molecular, system-wide approaches from biomedical research is likely to extend its use in ecotoxicology. Recommendations and perspectives Challenges for future research are (1) the identification of further suitable molecular markers as indicators of the mode of action, (2) the establishment of strong links between (molecular) effects in short-term assays in embryos and long-term (toxic) effects on individuals, (3) the definition of limitations of the model and (4) the development of tests that can be used for regulatory purposes.
Binary classification model to predict developmental toxicity of industrial chemicals in zebrafish
Journal of Chemometrics, 2016
The identification of industrial chemicals, which may cause developmental effects, is of great importance for an early detection of hazardous chemicals. Accordingly, categorical quantitative structure-activity relationship (QSAR) models were developed, based on developmental toxicity profile data for zebrafish from the ToxCast Phase I testing, to predict the toxicity of a large set of high and low production volume chemicals (H/LPVCs). QSARs were created using linear (LDA), quadratic, and partial least squares-discriminant analysis with different chemical descriptors. The predictions of the best model (LDA) were compared with those obtained by the freely available QSAR model VEGA, created based on a dataset with a different chemical domain. The results showed that despite similar accuracy (AC) of both models, the LDA model is more specific than VEGA and shows a better agreement between sensitivity (SE) and specificity (SP). Applying a 90% confidence level on the LDA model led to even better predictions showing SE of 0.92, AC of 0.95, and geometric mean of SE and SP (G) of 0.96 for the prediction set. The LDA model predicted 608 H/LPVCs as toxicants among which 123 chemicals fall inside the AD of the VEGA model, which predicted 112 of those as toxicants. Among the 112 chemicals predicted as toxic H/LPVCs, 23 have been previously reported as developmental toxicants. The here presented LDA model could be used to identify and prioritize H/LPVCs for subsequent developmental toxicity assessment, as a screening tool of potential developmental effects of new chemicals, and to guide synthesis of safer alternative chemicals.
Chemosphere, 2010
The BRIDGES (Biological Response Indicator Devices Gauging Environmental Stressors) bioanalytical tool was developed in response to the need for a quantitative technology for assessing the toxicity of environmentally relevant contaminant mixtures. This tool combines passive samplers with the embryonic zebrafish model. When applied in an urban river it effectively linked site specific, bioavailable contaminant mixtures to multiple biological responses. Embryonic zebrafish exposed to extracts from lipid-free passive samplers that were deployed at five locations, within and outside of the Portland Harbor Superfund Megasite, displayed different responses. Six of the eighteen biological responses observed in 941 exposed zebrafish were significantly different between sites. This demonstrates the sensitivity of the bio-analytical tool for detecting spatially distinct toxicity in aquatic systems; bridging environmental exposure to biological response.
Microchemical Journal, 2019
The Water Framework Directive (WFD) addresses the European Union Member States to achieve a good status of all water bodies. The WFD measures have allowed to reduce and eliminate the discharges, releases, and emissions of several priority substances with the aim of limiting the risks for the ecosystems and public health. Additionally, a Watch List (WL) for the monitoring of emerging contaminants was adopted to assess the environmental risk of new chemicals potentially toxic for water bodies. However, the amount of toxicants widespread in the environment is incredibly high and only a tiny fraction of substances is regularly monitored as established by the European legislation. Furthermore, the WFD does not involve a monitoring plan for chemical mixtures. Chemical analysis of water samples is essential for the monitoring programmes. However, it does not give full answers about the adverse effects of contaminants present in water bodies. In this context, the effect-based methods (i.e. bioassays and biomarkers) are essential tools to implement the monitoring strategies and reach the ambitious goals included in the WFD. Zebrafish early stages, i.e. embryos and early larvae, represent a very successful vertebrate model to assess the toxic effects on aquatic organisms and to subsequently perform a valid ecosystem monitoring. Indeed, this animal model raises many advantages and allows the definition of many toxicant modes of action (MoA). In this review, we report a large number of literature studies that performed experimental analysis using zebrafish embryos and early larvae to investigate the effects of the compounds included into the WFD and the related WL. We show how the zebrafish embryo model is able to detect and identify different toxicity mechanisms and specific effects with a great level of accuracy. Our goal is to promote the use of this effect-based method in the water monitoring strategies and to improve its use for regulatory purposes.
BACKGROUND: Humans and environmental organisms are constantly exposed to complex mixtures of chemicals. Extending our knowledge about the combined effects of chemicals is thus essential for assessing the potential consequences of these exposures. In this context, comprehensive molecular readouts as retrieved by omics techniques are advancing our understanding of the diversity of effects upon chemical exposure. This is especially true for effects induced by chemical concentrations that do not instantaneously lead to mortality, as is commonly the case for environmental exposures. However, omics profiles induced by chemical exposures have rarely been systematically considered in mixture contexts. OBJECTIVES: In this study, we aimed to investigate the predictability of chemical mixture effects on the whole-transcriptome scale. METHODS: We predicted and measured the toxicogenomic effects of a synthetic mixture on zebrafish embryos. The mixture contained the compounds diuron, diclofenac, and naproxen. To predict concentration-and time-resolved whole-transcriptome responses to the mixture exposure, we adopted the mixture concept of concentration addition. Predictions were based on the transcriptome profiles obtained for the individual mixture components in a previous study. Finally, concentration-and time-resolved mixture exposures and subsequent toxicogenomic measurements were performed and the results were compared with the predictions. RESULTS: This comparison of the predictions with the observations showed that the concept of concentration addition provided reasonable estimates for the effects induced by the mixture exposure on the whole transcriptome. Although nonadditive effects were observed only occasionally, combined, that is, multicomponent-driven, effects were found for mixture components with anticipated similar, as well as dissimilar, modes of action. DISCUSSION: Overall, this study demonstrates that using a concentration-and time-resolved approach, the occurrence and size of combined effects of chemicals may be predicted at the whole-transcriptome scale. This allows improving effect assessment of mixture exposures on the molecular scale that might not only be of relevance in terms of risk assessment but also for pharmacological applications. https://doi.
Reproductive toxicology (Elmsford, N.Y.), 2014
With the high cost and slow pace of toxicity testing in mammals, the vertebrate zebrafish has become a tractable model organism for high throughput toxicity testing. We present here a meta-analysis of 600 chemicals tested for toxicity in zebrafish embryos and larvae. Nineteen aggregated and 57 individual toxicity endpoints were recorded from published studies yielding 2695 unique data points. These data points were compared to lethality and reproductive toxicology endpoints analyzed in rodents and rabbits and to exposure values for humans. We show that although many zebrafish endpoints did not correlate to rodent or rabbit acute toxicity data, zebrafish could be used to accurately predict relative acute toxicity through the rat inhalation, rabbit dermal, and rat oral exposure routes. Ranking of the chemicals based on toxicity and teratogenicity in zebrafish, as well as human exposure levels, revealed that 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), benzo(a)pyrene, and chlorpyrifos r...