Facile silicification of plastic surface for bioassays (original) (raw)
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Lab on a Chip, 2007
Microarrays have become one of the most convenient tools for high throughput screening, supporting major advances in genomics and proteomics. Other important applications can be found in medical diagnostics, detection of biothreats, drug discovery, etc. Integration of microarrays with microfluidic devices can be highly advantageous in terms of portability, shorter analysis time and lower consumption of expensive biological analytes. Since fabrication of microfluidic devices using traditional materials such as glass is rather expensive, there is great interest in employing polymeric materials as a low cost alternative that is suitable for mass production. A number of commercially available plastic materials were reviewed for this purpose and poly(methylmethacrylate) Zeonor 1060R and Zeonex E48R were identified as promising candidates, for which methods for surface modification and covalent immobilization of DNA oligonucleotides were developed. In addition, we present proof-of-concept plastic-based microarrays with and without integration with microfluidics.
Analytical Chemistry, 2007
A mild and efficient surface activation protocol to convert polycarbonate (PC) substrates, e.g., plastic bases of compact disks, to biochip platforms for DNA probe immobilization and target detection is described. The preparation procedure (activation, patterning, and coupling) is simple and effective; the on-chip hybridization is sensitive and selective. Particularly, UV/ozone treatment of PC sheets produces a hydrophilic surface with a high density of reactive carboxylic acid groups [(4.8 ( 0.2) × 10 -10 mol/cm 2 ] in less than 10 min at ambient conditions, and no significant aging or physical damage to the substrate is observed. Covalent immobilization of DNA probes via both passive (reagent-less photopatterning and coupling in bulk solution phase) and flow-through (creation of microarrays with microfluidic channel plates) procedures has been demonstrated. Subsequent hybridization shows uniform and strong fluorescent signals for complementary target DNA and allows clear discrimination between fully complementary targets and strands with a single base-pair mismatch. The surface chemistry described herein will facilitate the development of disposable plastic biochips (not limited to DNA microarrays) and the fabrication of biomedical devices that are readable with conventional optical drives.
BioNanoScience, 2014
Microarray is the most powerful technology in the field of molecular diagnostics and genomics. The manufacturing of microarray devices, based on traditional materials such as silicon and glass, is not easily adaptable to integration into microfluidics system. Recently, there was an increased interest in using polymers as substrates for microarray devices production, but fabrication of microarray on polymer surfaces requires complicated chemistry modification. In this paper we report a simple and effective chemical process to generate an epoxy-silane coating on cyclic olefin polymer surface for the grafting of single-stranded DNA (ssDNA) probes. We demonstrated the effectiveness of this process by direct hybridization of microarray probes with oligonucleotides perfect matches and PCR product. All hybridized probes showed high values for signal-to-noise ratio with a negligible noise level. In addition we propose the water contact angle as process control parameter to control the chemical process capability for industrialization purpose.
Organo-silane coated substrates for DNA purification
Applied Surface Science, 2011
The use of blood as DNA source to be employed in genetic analysis requires a purification process in order to remove proteins, lipids and any other contaminants, such as hemoglobin, which inhibit PCR. On the other hand, the increasing demand of miniaturized and automated biological tests able to reduce time and cost of analysis, requires the development and the characterization of materials aimed to perform the DNA purification processes in micro-devices. In this work we studied the interaction of DNA molecules with modified silicon based substrates, positively charged after deposition of a (3-aminopropyl)triethoxysilane (APTES) or 3-[2-(2-aminoethylamino)ethylamino]propyl-trimethoxysilane (AEEA) interfacial layer. The evaluation of the DNA adsorption and elution capacity of different substrates (thermally grown silicon oxide, silicon oxide obtained by plasma enhanced chemical vapour deposition, and Pyrex ® ) was studied taking into account the nature of the substrate and the effect of DNA length (in the 208-50,000 base pairs range). Main findings are that DNA elution capacity depends both on the utilized substrate and on the choice of the silanizing agent. Higher DNA recovery was obtained from AEEA-modified substrates, but the eluted DNA had different electrophoretic properties from native DNA. DNA with the same electrophoretic behaviour as genomic DNA was instead recovered from APTES-treated surfaces. Furthermore, the length of DNA present in the starting material strongly modulates the elution efficiency, longer DNA being released in a lesser amount, suggesting that opportunely modified surfaces could be used as systems for differential DNA separation.
Analytical and Bioanalytical Chemistry, 2012
DNA microarrays have become one of the most powerful tools in the field of genomics and medical diagnosis. Recently, there has been increased interest in combining microfluidics with microarrays since this approach offers advantages in terms of portability, reduced analysis time, low consumption of reagents, and increased system integration. Polymers are widely used for microfluidic systems, but fabrication of microarrays on such materials often requires complicated chemical surface modifications, which hinders the integration of microarrays into microfluidic systems. In this paper, we demonstrate that simple UV irradiation can be used to directly immobilize poly(T)poly(C)-tagged DNA oligonucleotide probes on many different types of plastics without any surface modification. On average, five-and fourfold improvement in immobilization and hybridization efficiency have been achieved compared to surface-modified slides with aminated DNA probes. Moreover, the TC tag only costs 30% of the commonly used amino group modifications. Using this microarray fabrication technique, a portable cyclic olefin copolymer biochip containing eight individually addressable microfluidic channels was developed and used for rapid and parallel identification of Avian Influenza Virus by DNA hybridization. The one-step, cost-effective DNA-linking method on non-modified polymers significantly simplifies microarray fabrication procedures and permits great flexibility to plastic material selection, thus making it convenient to integrate microarrays into plastic microfluidic systems.
Silica-based solid phase extraction of DNA on a microchip
Tsinghua Science and Technology, 2004
Micro total analysis systems for chemical and biological analysis have attracted much attention. However, microchips for sample preparation and especially DNA purification are still underdeveloped. This work describes a solid phase extraction chip for purifying DNA from biological samples based on the adsorption of DNA on bare silica beads prepacked in a microchannel. The chip was fabricated with polydimethylsiloxane. The silica beads were packed in the channel on the chip with a tapered microchannel to form the packed bed. ...
Investigation of a biofunctional polymeric coating deposited onto silicon microcantilevers
Applied Surface Science, 2007
The paper deals with an appealing route to activate silicon microcantilevers (90, 110 and 130 mm long, 35 mm wide and 2 mm thick) for specific binding of biochemical species. The method consists in coating the underivatized microcantilevers with a biofunctional copolymer (based on N,Ndimethylacrylamide bearing silanating moieties) that was developed for low-density microarray assays on microscope glass slides. Coating deposition was obtained by dip-coating and its microstructure investigated by analyzing the resonance frequency values of bare and coated microcantilevers, by SEM and SFM imaging, SFM tip-scratch tests and XRR experiments. Results indicate that the coating is 2.5 nm thick and has a density of 1.22 g/cm 3 . The coating surface is nanostructured, displaying nanoblobs, which are from few up to 20 nm wide and, on average, 1.6 nm high. The diameter of the biggest nanoblobs is of the same order of magnitude of the gyration radius of the copolymer chains, suggesting that nanoblobs may identify individual macromolecules. #
Versatile derivatisation of solid support media for covalent bonding on DNA-microchips
Nucleic Acids Research, 1999
A chemistry was developed that permits on DNA-arrays both the covalent immobilisation of pre-fabricated nucleic acids-such as oligonucleotides, PCR-products or peptide nucleic acid oligomers-and the in situ synthesis of such compounds on either glass or polypropylene surfaces. Bonding was found to be stable even after some 30 cycles of stripping. Due to a dendrimeric structure of the linker molecule, the loading can be modified in a controlled manner and increased beyond the capacity of glass without negative effects on hybridisation efficiency. Also, the chemistry warrants the modulation of other surface properties such as charge or hydrophobicity. Preferentially, attachment of nucleic acids takes place only via the terminal amino-group of amino-modified oligonucleotides or the terminal hydroxyl-group of unmodified molecules so that the entire molecule is accessible to probe hybridisation. This derivatisation represents a support chemistry versatile enough to serve nearly all current forms of DNA-arrays or microchips.
ACS Applied Materials & Interfaces, 2012
A novel surface modification method was investigated. The surface of siliceous materials was modified using polystyrene, poly(acrylic acid), poly(N-isopropylacrylamide), and poly(p-acrylamidophenyl-α-mannoside) synthesized by reversible addition−fragmentation chain transfer polymerization. Thiol-terminated polymers were obtained by reduction of the thiocarbonate group using sodium borohydride. The polymers were immobilized on the surface via the thiol−ene click reaction, known as the Michael addition reaction. Immobilization of the polymers on the maleimidated surface was confirmed by X-ray photoelectron spectroscopy, infrared spectroscopy, and contact angle measurements. The polymer-immobilized surfaces were observed by atomic force microscopy, and the thickness of the polymer layers was determined by ellipsometry. The thickness of the polymer immobilized by the maleimide−thiol reaction was less than that formed by spin coating, except for polystyrene. Moreover, the polymer-immobilized surfaces were relatively smooth with a roughness of less than 1 nm. The amounts of amine, maleimide, and polymer immobilized on the surface were determined by quartz crystal microbalance measurements. The area occupied by the amine-containing silane coupling reagent was significantly less than the theoretical value, suggesting that a multilayer of the silane coupling reagent was formed on the surface. The polymer with low molecular weight had the tendency to efficiently immobilize on the maleimidated surface. When poly(p-acrylamidophenyl-α-mannoside)-immobilized surfaces were used as a platform for protein microarrays, strong interactions were detected with the mannose-binding lectin concanavalin A. The specificity of poly(pacrylamidophenyl-α-mannoside)-immobilized surfaces for concanavalin A was compared with poly-L-lysine-coated surfaces. The poly-L-lysine-coated surfaces nonspecifically adsorbed both concanavalin A and bovine serum albumin, while the poly(pacrylamidophenyl-α-mannoside)-immobilized surface preferentially adsorbed concanavalin A. Moreover, the poly(pacrylamidophenyl-α-mannoside)-immobilized surface was applied to micropatterning with photolithography. When the micropattern was formed on the poly(p-acrylamidophenyl-α-mannoside)-spin-coated surface by irradiation with ultraviolet light, the pattern of the masking design was not observed on the surface adsorbed with fluorophore-labeled concanavalin A using a fluorescent microscope because of elution of poly(p-acrylamidophenyl-α-mannoside) from the surface. In contrast, fluorophorelabeled concanavalin A was only adsorbed on the shaded region of the poly(p-acrylamidophenyl-α-mannoside)-immobilized surface, resulting in a distinctive fluorescent pattern. The surface modification method using maleimidation and reversible addition−fragmentation chain transfer polymerization can be used for preparing platforms for microarrays and micropatterning of proteins.