Ecological linkages between community and genetic diversity in zooplankton among boreal shield lakes (original) (raw)
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Estuarine, Coastal and Shelf Science, 2013
Understanding the extent to which neutral processes and adaptive divergence shape the spatial structure of natural populations is a major goal in evolutionary biology and is especially important for the identification of significant levels of biodiversity. Our results identified replicated habitat-specific (adaptive) phenotypic divergence in the brown macroalga Fucus vesiculosus that is independent of population (neutral) genetic structure. F. vesiculosus inhabits contiguous and contrasting marine to estuarine intertidal habitats. Combining analyses of genetic and phenotypic traits of populations living under differential selective regimes (estuaries and open coast), we investigated levels of neutral genetic differentiation and adaptive physiological responses to emersion stress. In southwest England (SW UK) and northern Iberia (N. Iberia), populations living in estuaries and marine coastal habitats were genetically characterized at six microsatellite loci. In N. Iberia, two clades with limited admixture were recovered, each including one open coast site and the adjacent estuarine location. In contrast, SW UK samples clustered according to habitat and formed three distinct groups of genotypes; one including the two open coast locations and the other two representing each of the estuarine sites. Temperature loggers revealed distinct emersion regimes that characterized each habitat type independently of the region, while water and air temperature profiles showed site-specific trends. Despite acclimation under usual conditions, trait means of emersion stress resilience showed a strong phenotypic divergence between habitats, consistent with environmental clines in exposure time observed in the different habitats. We demonstrate that neutral genetic clusters do not reflect locally adapted population units. Our results identified replicated habitat-specific (adaptive) phenotypic divergence that is independent of population (neutral) genetic structure in F. vesiculosus. The significance of such findings extends beyond the theoretical evolutionary and ecological interest of discovering parallel adaptive responses to the broader implications for conservation of intraspecific biodiversity.
A Neutral Theory for Interpreting Correlations between Species and Genetic Diversity in Communities
The American naturalist, 2015
Spatial patterns of biological diversity have been extensively studied in ecology and population genetics, because they reflect the forces acting on biodiversity. A growing number of studies have found that genetic (within-species) and species diversity can be correlated in space (the so-called species-gene diversity correlation [SGDC]), which suggests that they are controlled by nonindependent processes. Positive SGDCs are generally assumed to arise from parallel responses of genetic and species diversity to variation in site size and connectivity. However, this argument implicitly assumes a neutral model that has yet to be developed. Here, we build such a model to predict SGDC in a metacommunity. We describe how SGDC emerges from competition within sites and variation in connectivity and carrying capacity among sites. We then introduce the formerly ignored mutation process, which affects genetic but not species diversity. When mutation rate is low, our model confirms that variatio...
Ecology and Evolution, 2014
Despite strong interest in understanding how habitat spatial structure shapes the genetics of populations, the relative importance of habitat amount and configuration for patterns of genetic differentiation remains largely unexplored in empirical systems. In this study, we evaluate the relative influence of, and interactions among, the amount of habitat and aspects of its spatial configuration on genetic differentiation in the pitcher plant midge, Metriocnemus knabi. Larvae of this species are found exclusively within the water-filled leaves of pitcher plants (Sarracenia purpurea) in a system that is naturally patchy at multiple spatial scales (i.e., leaf, plant, cluster, peatland). Using generalized linear mixed models and multimodel inference, we estimated effects of the amount of habitat, patch size, interpatch distance, and patch isolation, measured at different spatial scales, on genetic differentiation (F ST) among larval samples from leaves within plants, plants within clusters, and clusters within peatlands. Among leaves and plants, genetic differentiation appears to be driven by female oviposition behaviors and is influenced by habitat isolation at a broad (peatland) scale. Among clusters, gene flow is spatially restricted and aspects of both the amount of habitat and configuration at the focal scale are important, as is their interaction. Our results suggest that both habitat amount and configuration can be important determinants of genetic structure and that their relative influence is scale dependent.
Evolutionary Ecology Research, 2006
Question: How can we link genotypic, phenotypic, individual, population, and community levels of organization so as to illuminate general ecological and evolutionary processes and provide a framework for a quantitative, integrative evolutionary biology? Framework: We introduce an evolutionary framework that maps different levels of biological diversity onto one another. We provide (1) an overview of maps linking levels of biological organization and (2) a guideline of how to analyse the complexity of relationships from genes to population growth. Method: We specify the appropriate levels of biological organization for responses to selection, for opportunities for selection, and for selection itself. We map between them and embed these maps into an ecological setting.
Connections between species diversity and genetic diversity
Ecology Letters, 2005
Species diversity and genetic diversity remain the nearly exclusive domains of community ecology and population genetics, respectively, despite repeated recognition in the literature over the past 30 years of close parallels between these two levels of diversity. Species diversity within communities and genetic diversity within populations are hypothesized to co-vary in space or time because of locality characteristics that influence the two levels of diversity via parallel processes, or because of direct effects of one level of diversity on the other via several different mechanisms. Here, we draw on a wide range of studies in ecology and evolution to examine the theoretical underpinnings of these hypotheses, review relevant empirical literature, and outline an agenda for future research. The plausibility of species diversity-genetic diversity relationships is supported by a variety of theoretical and empirical studies, and several recent studies provide direct, though preliminary support. Focusing on potential connections between species diversity and genetic diversity complements other approaches to synthesis at the ecologyevolution interface, and should contribute to conceptual unification of biodiversity research at the levels of genes and species.
Heredity, 2006
Understanding the local and regional patterns of species distributions has been a major goal of ecological and evolutionary research. The notion that these patterns can be understood through simple quantitative rules is attractive, but while numerous scaling laws exist (e.g., metabolic, fractals), we are aware of no studies that have placed individual traits and community structure together within a genetics based scaling framework. We document the potential for a genetic basis to the scaling of ecological communities, largely based upon our long-term studies of poplars (Populus spp.). The genetic structure and diversity of these foundation species affects riparian ecosystems and determines a much larger community of dependent organisms. Three examples illustrate these ideas. First, there is a strong genetic basis to phytochemistry and tree architecture (both above-and belowground), which can affect diverse organisms and ecosystem processes. Second, empirical studies in the wild show that the local patterns of genetics based community structure scale up to western North America. At multiple spatial scales the arthropod community phenotype is related to the genetic distance among plants that these arthropods depend upon for survival. Third, we suggest that the familiar species-area curve, in which species richness is a function of area, is also a function of genetic diversity. We find that arthropod species richness is closely correlated with the genetic marker diversity and trait variance suggesting a genetic component to these curves. Finally, we discuss how genetic variation can interact with environmental variation to affect community attributes across geographic scales along with conservation implications.
Freshwater Biology
1. Recent findings highlighted the central role of the structure of the river network in shaping spatial patterns of genetic diversity in riverscapes. However, the influence of multiple anthropogenic stressors on these patterns may be just as important and the relative impacts of these two types of predictors have rarely been quantified simultaneously in river networks. Here, we contributed to filling this gap by investigating the relative contribution of both network structure and multiple anthropogenic stressors in shaping spatial patterns of genetic diversity in two freshwater fishes (Gobio occitaniae and Phoxinus phoxinus). 2. We focused on two rivers in which the two fish species were sampled along the upstream-downstream gradient. Microsatellite markers were used to quantify genetic diversity from three indices: allelic richness, private allelic richness and genetic uniqueness. Each sampling site was physically characterised according to its position in the network, and was described for multiple anthropogenic stressors including habitat degradation, fragmentation and stocking. This multiple-stressors approach was conducted using a fully explicit and generalisable analytical framework designed to cope with strong collinearity among environmental variables. 3. Overall, the contribution of network structure to the variance in genetic diversity was 1.8 times higher than the contribution of anthropogenic stressors. Both the position of sites along the upstream-downstream gradient and stocking were strong and consistent drivers of genetic variability. Conversely, the local influences of habitat degradation and fragmentation were species-and river-specific, sometimes even varying along the river channel, thus preventing any generalisations. 4. We concluded that the natural structure of networks and stocking strongly influence spatial patterns of genetic diversity in a predictable way, whereas the influence of other human activities may be much more difficult to predict over species and contexts.
2009
Landscape genetics holds promise for the forecasting of spatial patterns of genetic diversity based on key environmental features. Yet, the degree to which inferences based on single species can be extended to whole communities is not fully understood. We used a pristine and spatially structured community of three landlocked salmonids (Salvelinus fontinalis, Salmo salar, and Salvelinus alpinus) from Gros Morne National Park (Newfoundland, Canada) to test several predictions on the interacting effects of landscape and life history variation on genetic diversity, neutral divergence, and gene flow (m, migration rate). Landscape factors consistently influenced multispecies genetic patterns: (i) waterfalls created strong dichotomies in genetic diversity and divergence between populations above and below them in all three salmonids; (ii) contemporary m decreased with waterway distance in all three species, while neutral genetic divergence (h) increased with waterway distance, albeit in only two taxa; (iii) river flow generally produced downstream-biased m between populations when waterfalls separated these, but not otherwise. In contrast, we expected differential life history to result in a hierarchy of neutral divergence (S. salar > S. fontinalis > S. alpinus) based on disparities in dispersal abilities and population size from previous mark-recapture studies. Such hierarchy additionally matched varying degrees of spatial genetic structure among species revealed through individual-based analyses. We conclude that, whereas key landscape attributes hold power to predict multispecies genetic patterns in equivalent communities, they are likely to interact with species-specific life history attributes such as dispersal, demography, and ecology, which will in turn affect holistic conservation strategies.
The effect of spatially correlated environments on genetic diversity-area relationships
2011
Understanding the spatial patterns of genetic diversity and what causes them is an important outstanding question in ecology. Here we investigate the roles of spatial heterogeneity and system area in generating genome diversity, and study its dependence with sampled area. We study an individual-based model that incorporates natural selection on the habitat type and compare the effects of asexual and sexual reproductions. A key ingredient of the model is the possibility to tune the level of spatial heterogeneity among the habitats. Our results corroborate either the bi-phasic or tri-phasic scenarios, one phase corresponding to a power law regime, for the diversity-area relationship in both sexual and asexual populations, being the shape of the curve influenced by mutation rates and spatial correlation. These observations are verified for distinct sets of parameter values.