Molecular genetics applications in fisheries: snake oil or restorative? (original) (raw)

DNA in Action: Rapid Application of DNA Variation to Sockeye Salmon Fisheries Management

Conservation Genetics, 2000

Commitment to conservation-based management of exploited fish species imposes unprecedented requirements for adaptive, real-time management of biologically and socially complex mixed-stock fisheries such as those conducted for Pacific salmon. Stock identification is a key component of the management process, with population-specific timing and abundance information often incorporated into management decisions. By using both microsatellite and major histocompatibility complex genetic variation, we achieved highly accurate estimates of stock composition for Fraser River sockeye salmon. Over a 2-month period in 2002, we analyzed 9300 returning Fraser River sockeye salmon sampled in mixed-stock fisheries, and provided stock composition estimates to fishery managers within 9-30 h of sample delivery. Stock-specific exploitation targets governed by conservation concerns were achieved in this fishery.

Use and exchange of salmonid genetic resources relevant for food and aquaculture

Reviews in Aquaculture, 2000

This review describes the global use and exchange of salmonid genetic resources for human food from fisheries and aquaculture. Trends in population abundance, variations in the harvest of wild stocks, historic transfers and worldwide translocations of stocks for fisheries and aquaculture are briefly described for seven species of Pacific salmon (Oncorhynchus), for Atlantic salmon (Salmo salar) and for Arctic charr (Salvelinus alpinus). Also considered are the tools currently used to assist in the conservation of endangered wild populations (e.g. captive breeding programmes and gene banks) and the major techniques developed to enhance the production of cultured stocks (selective breeding, hybridization, sex control, chromosome set manipulation and gene transfer). The review briefly discusses the significance of salmon production to the economy of selected countries and the complexity of allocating economic value to long-range migratory fisheries resources that also hold direct and indirect value for aboriginal ⁄ native communities and recreational users.

Half a century of genetic interaction between farmed and wild Atlantic salmon: Status of knowledge and unanswered questions

Fish and Fisheries, 2017

Atlantic salmon (Salmo salar) is one of the best researched fishes, and its aquaculture plays a global role in the blue revolution. However, since the 1970s, tens of millions of farmed salmon have escaped into the wild. We review current knowledge of genetic interactions and identify the unanswered questions. Native salmon populations are typically genetically distinct from each other and potentially locally adapted. Farmed salmon represent a limited number of wild source populations that have been exposed to ≥12 generations of domestication. Consequently, farmed and wild salmon differ in many traits including molecular-genetic polymorphisms, growth, morphology, life history, behaviour, physiology and gene transcription. Field experiments have demonstrated that the offspring of farmed salmon display lower lifetime fitness in the wild than wild salmon and that following introgression, there is a reduced production of genetically wild salmon and, potentially, of total salmon production. It is a formidable task to estimate introgression of farmed salmon in wild populations where they are not exotic. New methods have revealed introgression in half of ~150 Norwegian populations, with point estimates as high as 47%, and an unweighted average of 6.4% across 109 populations. Outside Norway, introgression remains unquantified, and in all regions, biological changes and the mechanisms driving population-specific impacts remain poorly documented. Nevertheless, existing knowledge shows that the long-term consequences of introgression is expected to lead to changes in life-history traits, reduced population productivity and decreased resilience to future challenges. Only a major reduction in the number of escapees and/or sterility of farmed salmon can eliminate further impacts.

Assessing and Managing Man's Impact on Fish Genetic Resources

Canadian Journal of Fisheries and Aquatic Sciences, 1981

Historically, human activities have adversely affected the genetic resources of many fish species. We suggest that a continuum of vulnerability to loss of genetic resources exists for fishes. Primary determinants of vulnerability are extent of stock structure in populations and fundamental life history features, such as length of juvenile period, sex ratio, and fecundity. The genetic basis for this trend is the relationship between the subdivided state of a population (its stock structure) and important processes of genetic change, which include selection, gene flow, and genetic drift. We relate various human activities to their effects on genetic resources through these genetic processes, and we review various lines of evidence for a relationship between stock structure and genetic diversity. In general, we found that those species whose populations are subdivided into nearly isolated stocks (e.g. Pacific and Atlantic salmon) are more vulnerable to directional changes in genetic co...

Ocean's eleven: a critical evaluation of the role of population, evolutionary and molecular genetics in the management of wild fisheries

Fish and Fisheries, 2013

Significant changes have occurred in the well-established partnership between fisheries managers and geneticists over the last 50 years. It is therefore timely to review and recalibrate the ways in which genetic technologies can assist the fishing industry to maintain productive and sustainable harvests. Our objective is to contribute to the mutual understanding of all stakeholders in the genetics-management partnership. Genetic technologies that are relevant to fisheries management are grouped into eleven themes, which are described in plain language for a nonspecialist audience. The role that the genetic information plays in fisheries management is explained, along with an assessment of the challenges and barriers that may be preventing the uptake of the information into the fisheries management process. The compelling conclusion is that genetics offers a diverse collection of versatile and useful tools for informing fisheries managers about issues that have a biological basis. Presently, mainstream use of genetic tools focuses on a narrow set of fisheries management issues, but the diversity of genetic tools and the novel issues they can address indicates that uptake will grow, particularly as communication between geneticists and end-users improves.

Evaluation of genetic effects on wild salmon populations from stock enhancement

ICES Journal of Marine Science, 2020

Many salmonid populations are of conservation concern, and the release of hatchery-produced juveniles is a frequently used measure to alleviate declines and increase harvest opportunities. While such releases may be of conservation value for some populations, stocking may also decrease the effective population size and subsequently impose additional strain on already threatened populations. In this study, we assessed how the cohort-wise effective number of breeders in five populations of Atlantic salmon (Salmo salar) were affected by supplementation. Altogether, 19 cohorts were studied (2–7 cohorts per population) by estimating the proportion hatchery-released individuals and the effective number of wild and captive breeders in each cohort of the respective populations. We show that the effect of releasing captive-bred individuals varies both between populations and between years within the same population. A Ryman–Laikre effect—where the effective number of breeders has decreased a...