Neutrality and evolvability of designed protein sequences (original) (raw)
Related papers
Statistical theory of neutral protein evolution by random site mutations
Journal of Chemical Sciences, 2009
Protein Foldability and Designability: General Physics and Pretty Chemistry
1998
Stability of Designed Proteins against Mutations
Physical Review Letters, 1999
The Designability of Protein Structures
Journal of Molecular …, 2001
Structurally constrained protein evolution: results from a lattice simulation
The European Physical Journal B, 2000
Theory for Protein Mutability and Biogenesis
Proceedings of The National Academy of Sciences, 1990
Designability of protein structures
Journal of Molecular Graphics and Modelling, 2000
Simple models of the protein folding problem
Physica A: Statistical Mechanics and its Applications, 2000
Conformation-dependent sequence design: evolutionary approach
The European Physical Journal E - Soft Matter, 2004
Evolutionary information for specifying a protein fold
Nature, 2005
A reduced amino acid alphabet for understanding and designing protein adaptation to mutation
European Biophysics Journal, 2007
Designing Misfolded Proteins by Energy Landscaping
The Journal of Physical Chemistry B, 2011
Design of amino acid sequences to fold into Cα-model proteins
Jesper Ferkinghoff-borg, Guido Tiana
Computers & chemical …, 2005
Emergence of Protein Fold Families through Rational Design
PLoS Computational Biology, 2006
Neutral Evolution of Model Proteins: Diffusion in Sequence Space and Overdispersion
Journal of Theoretical Biology, 1999
Engineering Proteins for Stability and Efficient Folding
Evidence against the Paradigm of Energy Minimization in Protein Design
2012
Folding and misfolding of designed proteinlike chains with mutations
The Journal of Chemical Physics, 1998
Lessons in Protein Design from Combined Evolution and Conformational Dynamics
Scientific Reports, 2015
Designability and thermal stability of protein structures
Polymer, 2004
Frustration and hydrophobicity interplay in protein folding and protein evolution
The Journal of Chemical Physics, 2006
A New Formulation of Protein Evolutionary Models that Account for Structural Constraints
Molecular Biology and Evolution, 2014
Molecular Biology and Evolution, 2004
Development and optimisation of a novel genetic algorithm for studying model protein folding
Theoretical Chemistry Accounts, 2004
Exploring folding free energy landscapes using computational protein design
Current Opinion in Structural Biology, 2004
Imprint of Evolution on Protein Structures
Proceedings of the …, 2004
Protein-fold evolution in the test tube
Computational protein design with side-chain conformational entropy
Proteins-structure Function and Bioinformatics, 2009