Genomic resources in chickpea (original) (raw)

Abstract

Chickpea has considerably increased the genomic resources in recent years providing highly saturated genetic maps including anonymous or gene-specific markers targeting some agronomic traits of interest. In addition, the publication of the two draft genome sequences of Kabuli and Desi chickpea types opens a new era in genomic tools. Furthering in our understanding of the association between phenotypic traits (Quantitative Trait loci-QTL-or genes)with the trasncriptome and gene annotation provided by genome sequencing data will be the future challenge to be able to exploit with success marker-assisted Selection (MAS).

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References (13)

  1. Castro P, Piston F, Madrid E, Millan T, Gil J, Rubio J (2010) Development of chickpea near- isogenic lines for Fusarium wilt. Theor Appl Genet 121:1519-1526
  2. Choudhary P, Khanna SM, Jain PK, Bharadwaj C, Kumar J, Lakhera PC, Srinivasan R (2012) Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers. Genet Mol Res 11:891-905
  3. Gaur R, Azam S, Jeena G, Khan AW, Choudhary S, Jain M, Yadav G, Tyagi AK, Chattopadhyay D, Bhatia S (2012) High- throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea (Cicer arietinum L.). DNA Res 19:357-373
  4. Gujaria N, Kumar A, Dauthal P, Dubey A, Hiremath P, Prakash AB, Farmer A, Bhide M, Shah T, Gaur PM, Upadhyaya HD, Bhatia S, Cook DR, May GD, Varshney RK Development and use of molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor Appl Genet 122:1577-1589
  5. Hiremath PJ, Kumar A, Penmetsa RV, Farmer A, Schlueter JA, Chamarthi SK, Whaley AM, Carrasquilla-Garcia N, Gaur PM, Upadhyaya HD, Kavi Kishor PB, Shah TM, Cook DR, Varshney RK (2012) Large-scale development of cost- effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol J 10:716-732
  6. Madrid E, Chen W, Rajesh PN, Castro P, Millán T, Gil J (2012) Allele-specific amplification for the detection of ascochyta blight resistance in chickpea. Euphytica 189:183-190
  7. Millan T, Winter P, Jüngling R, Gil J, Rubio J, Cho S, Cobos MJ, Iruela M, Rajesh PN, Tekeoglu M, Kahl G, Muehlbauer FJ (2010) A consensus genetic map of chickpea (Cicer arietinum L.) based on 10 mapping populations. Euphytica 175:175-189
  8. Jain M, Gopal M, Patel RK, Priya P, Jhanwar S, Khan AW, Shah N, Singh VK, Garg R, Jeena G, Yadav M, Kant C, Sharma P, Yadav G, Bhatia S, Tyagi AK, Chattopadhyay D (2013) A draft genome sequence of the pulse crop chickpea (Cicer arietinumL.) Plant J 74:715-729
  9. Nayak SN, Zhu H, Varghese N, Datta S, Choi H-K, Horres R, Jüngling R, Singh J, Kishor PBK, Sivaramakrishnan S, Hoisington DA, Kahl G, Winter P, Cook Varshney RK (2010) Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome. Theor Appl Genet 120:1415- 1441
  10. Rubio J, Gil J, Cobos MJ, Millán T (2012) Chickpea. In: Pérez de la Vega M, Torres AM, Cubero JI, Kole C (eds) Genetics, Genomics and Breeding of Cool Season Grain Legumes. Science Publishers, Boca Raton, USA, 205-233
  11. Thudi M, Bohra A, Nayak SN, Varghese N, Shah TM, Penmetsa RV, Thirunavukkarasu N, Gudipati S, Gaur PM, Kulwa PL, Upadhyaya HD, KaviKishor PB, Winter P, Kah G, Town CD, Kilian A, Cook DR, Varshney RK (2011) Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). PLoS ONE 6: e27275
  12. Varshney RK, Song C, Saxena RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T, Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla- Garcia N, Condie JA, Upadhyaya HD, Luo M-C, Thudi M, Gowda CLL, Singh NP, Lichtenzveig J, Gali KK, Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G, Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR (2013) Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nat Biotechnol 31:240-248
  13. Winter P, Benko-Iseppon A-M, Hüttel B, Ratnaparkhe M, Tullu A, Sonnante G, Pfaff T, Tekeoglu M, Santra D, Sant VJ, Rajesh PN, Kahl G, Muehlbauer FJ (2000) A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum x C. reticulatum cross: Localization of resistance genes for fusarium wilt races 4 and 5. Theor Appl Genet 101:1155-1163