Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter (original) (raw)

From The Cover: Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coli RNA polymerase at the T7A1 promoter

Hermann Heumann

Proceedings of the National Academy of Sciences, 2005

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Real-time characterization of intermediates in the pathway to open complex formation by Escherichia coil RNA polymerase at the T7AI promoter

bianca sclavi

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Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase

Craig Bingman

Proceedings of the National Academy of Sciences, 2007

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Structure of open promoter complexes with Escherichia coli RNA polymerase as revealed by the DNase I footprinting technique: compilation analysis

O. Ozoline

Nucleic Acids Research, 1995

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Spectroscopic Determination of Open Complex Formation at Promoters for Escherichia coli RNA Polymerase †

Pieter Dehaseth

Biochemistry, 1997

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DNA functional groups required for formation of open complexes between Escherichia coli RNA polymerase and the λ P(R) promoter. Identification via base analog substitutions

Pieter Dehaseth

Journal of Biological Chemistry

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Functional Architecture of T7 RNA Polymerase Transcription Complexes

Dhananjaya Nayak

Journal of Molecular Biology, 2007

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Structural Organization of Bacterial RNA Polymerase Holoenzyme and the RNA Polymerase-Promoter Open Complex

Richard Ebright

Cell, 2002

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Fluorescence-Detected Conformational Changes in Duplex DNA in Open Complex Formation by Escherichia coli RNA Polymerase: Upstream Wrapping and Downstream Bending Precede Clamp Opening and Insertion of the Downstream Duplex

Munish Chhabra

Biochemistry, 2020

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Fluorescence-Detected Conformational Changes in Duplex DNA in Open Complex Formation by E. coli RNA Polymerase: Upstream Wrapping and Downstream Bending Precede Clamp Opening and Insertion of the Downstream Duplex

Munish Chhabra

2020

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Organization of Open Complexes at Escherichia coli Promoters. LOCATION OF PROMOTER DNA SITES CLOSE TO REGION 2.5 OF THE sigma 70 SUBUNIT OF RNA POLYMERASE

Stephen Minchin

Journal of Biological Chemistry, 1999

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Wrapping of DNA around the E.coli RNA polymerase open promoter complex

Martin Guthold

The EMBO Journal, 1999

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Mode of DNA-protein interaction between the C-terminal domain of Escherichia coli RNA polymerase alpha subunit and T7D promoter UP element

O. Ozoline

Nucleic Acids Research, 2001

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Topography of intermediates in transcription initiation of E.coli

Hermann Heumann

The EMBO journal, 1990

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Initiation Complexes of Escherichia coli RNA Polymerase and T7 DNA

David McConnell

European Journal of Biochemistry, 1973

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Conformational changes of E. coli RNA polymerase during transcription initiation

Ranjan Sen

Biophysical Chemistry, 1996

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An activity map of the Escherichia coli RNA polymerase bridge helix

Robert Weinzierl

Journal of Biological …, 2011

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Conformational Changes of Escherichia coli σ54-RNA-Polymerase upon Closed–Promoter Complex Formation

Marin Van Heel

Journal of Molecular Biology, 2005

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Visualization of intermediary transcription states in the complex between Escherichia coli DNA-dependent RNA polymerases and a promoter-carrying DNA fragment using the gel retardation method

Hermann Heumann

European Journal of Biochemistry, 1986

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DNA melting by RNA polymerase at the T7A1 promoter precedes the rate-limiting step at 37 C and results in the accumulation of an off-pathway intermediate

Hermann Heumann

Nucleic Acids Research, 2009

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Single DNA Molecule Analysis of Transcription Complexes

Martin Guthold

Methods in Enzymology, 2003

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Base Flipping in Open Complex Formation at Bacterial Promoters

Pieter Dehaseth

Biomolecules, 2015

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Structural Organization of the RNA Polymerase-Promoter Open Complex

Vladimir Mekler

Cell, 2000

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Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach

Kelly-Anne Twist

PLoS Biology, 2010

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Alteration of the −35 and −10 sequences and deletion the upstream sequence of the −35 region of the promoter A1 of the phage T7 in dsDNA confirm the contribution of non-specific interactions with E. coli RNA polymerase to the transcription initiation process

Katarzyna Turecka

Frontiers in Molecular Biosciences, 2024

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The Escherichia coli RNA Polymerasemiddle dotAnti-sigma 70 AsiA Complex Utilizes alpha -Carboxyl-terminal Domain Upstream Promoter Contacts to Transcribe from a -10/-35 Promoter

Annie Kolb

Journal of Biological Chemistry, 2001

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Release of the .sigma. subunit from Escherichia coli RNA polymerase transcription complexes is dependent on the promoter sequence

Thomas Stackhouse

Biochemistry, 1989

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Evidence for a Tyrosine–Adenine Stacking Interaction and for a Short-lived Open Intermediate Subsequent to Initial Binding of Escherichia coli RNA Polymerase to Promoter DNA

Pieter Dehaseth

Journal of Molecular Biology, 2009

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FRET Characterization of DNA Wrapping in Closed and Open Escherichia coli RNA Polymerase - λPR Promoter Complexes

Munish Chhabra

Biochemistry, 2016

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Structure of the Escherichia coli RNA polymerase α subunit C-terminal domain

Jens Birktoft

Acta Crystallographica Section D Biological Crystallography, 2010

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Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase·σ54 holoenzyme by scanning force microscopy

Martin Guthold

Journal of Molecular Biology, 1997

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Transcriptional Activation via DNA-looping: Visualization of Intermediates in the Activation Pathway of E. coli RNA Polymerases s s54 Holoenzyme by Scanning Force Microscopy

Martin Guthold

J Mol Biol, 1997

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Indirect read-out of the promoter DNA by RNA polymerase in the closed complex

Neeladri Roy, I. Bera

Nucleic Acids Research, 2013

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Twisted or Shifted? Fluorescence Measurements of Late Intermediates in Transcription Initiation by T7 RNA Polymerase

karsten theis

Biochemistry, 2007

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Topological and Conformational Analysis of the Initiation and Elongation Complex of T7 RNA Polymerase Suggests a New Twist

karsten theis

Biochemistry, 2004

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