Functional geometry of protein interactomes (original) (raw)

Profile image of Natasa PrzuljNatasa Przulj

2019, Bioinformatics

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Functional geometry of protein-protein interaction networks

Natasa Przulj

arXiv (Cornell University), 2018

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Large-scale mapping of human protein interactome using structural complexes

Anna Panchenko

EMBO reports, 2012

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Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details

Joan Planas

Molecular Informatics, 2012

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Structural and Functional Roles of Coevolved Sites in Proteins

Anna Panchenko

PLoS ONE, 2010

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Analyzing Protein-Protein Interaction Networks with Web Tools

Kawsar Ahmed

Current Bioinformatics, 2011

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UniHI 4: new tools for query, analysis and visualization of the human protein-protein interactome

Jenny Russ

Nucleic Acids Research, 2008

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Probing protein-protein interactions in real time

Paul Hansma

Nature Structural Biology, 2000

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Protein interaction networks by proteome peptide scanning

Luisa Montecchi-Palazzi

2004

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The IntAct molecular interaction database in 2010

Luisa Montecchi-Palazzi

2010

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Structure and Function of Protein

Smita Mohanty

Biochemistry & physiology, 2013

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Alignment-free protein interaction network comparison

Gesine Reinert

Bioinformatics, 2014

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Protein-Protein Interactions: Structures and Druggability

Tom Blundell

NATO science for peace and security series, 2015

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Author response: Encounter complexes and dimensionality reduction in protein–protein association

Sandor Vajda

2014

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Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space

Robert Jernigan

Proteins, 2002

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Protein Subunit Association: NOT a Social Network

Laurent Vuillon

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NGPINT: A Next-generation protein-protein interaction software

Roger Wise

2020

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2015 DeGrado Samish Zhang The Membrane and Soluble Protein Helix helix interactome Similar Geometry via Different Interactions Structure SUP6

Ilan Samish

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What Evidence Is There for the Homology of Protein-Protein Interactions?

Charlotte Deane

PLoS Computational Biology, 2012

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Deciphering protein–protein interactions. part i. experimental techniques and databases

Anna Panchenko

2007

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Computational Large-Scale Mapping of Protein-Protein Interactions Using Structural Complexes

Anna Panchenko

Current Protocols in Protein Science, 2001

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Integrating protein-protein interaction networks with phenotypes reveals signs of interactions

Claire Hu

Nature Methods, 2013

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Local Network Patterns in Protein-Protein Interfaces

Gesine Reinert

PLoS ONE, 2013

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Biomanta ontology: The integration of protein-protein interaction data

Andrew Newman

Interdisciplinary Ontology …, 2008

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Initial large-scale exploration of protein-protein interactions in human brain

Sudhir Sahasrabudhe

Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003

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Protein-protein interactions: Making sense of networks via graph-theoretic modeling

Natasa Przulj

BioEssays, 2010

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DOMINO: a database of domain-peptide interactions

Gianni Cesareni

Nucleic Acids Research, 2007

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PLIC: protein-ligand interaction clusters

Sumanta Mukherjee

Database, 2014

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Coverage of protein domain families with structural protein–protein interactions: Current progress and future trends

Anna Panchenko

Progress in Biophysics and Molecular Biology, 2014

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Protein Three-Dimensional Structural Databases: Domains, Structurally Aligned Homologues and Superfamilies

Tom Blundell

Acta Crystallographica Section D-biological Crystallography, 1998

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The Protein Information Resource (PIR)

John S Garavelli

Nucleic Acids Research, 2000

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Physics approaches to protein interactions and gene regulation

Anna Panchenko

Physical Biology, 2011

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A geometric representation of protein sequences

Olivier Poch

2007 IEEE International Conference on Bioinformatics and Biomedicine, 2007

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Homology Inference of Protein-Protein Interactions via Conserved Binding Sites

Anna Panchenko

PLoS ONE, 2012

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Transient protein-protein interactions

Saliha Ece Acuner Zorluuysal

Protein Engineering Design and Selection, 2011

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Running Title: Protein-Protein Interaction Sites Predicting Protein-Protein Interaction Sites From Amino Acid Sequence

Drena Dobbs

2003

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BioinformaticsComputer ScienceComputational GeometryMedicineBiological SciencesProtein-Protein InteractionGeneralizationMathematical SciencesCluster AnalysisProteinsInteractomeBiological systemsProtein Complexesgeometria computacional