Analysis of candidate gene expression (original) (raw)

2011

Abstract

<b>Copyright information:</b>Taken from "Analysis of prolactin-modulated gene expression profiles during the Nb2 cell cycle using differential screening techniques"Genome Biology 2000;1(4):research0008.1-research0008.15.Published online 16 Oct 2000PMCID:PMC15026.Copyright © 2000 GenomeBiology.com General principles. Messenger RNAs from the different cell populations (cells A and B) are reverse transcribed. Multiplex PCR is then performed using specific primer pairs to amplify the cDNAs of interest. The resulting mixture of PCR products is radiolabeled and these complex probes are used to hybridize identical membranes spotted with the candidate gene cDNA targets. After autoradiography, the intensities of the hybridization signals are compared and quantified. Arrows indicate the positions of differentially expressed genes. The absence of hybridization (open circles) indicates that the candidate gene is not expressed. Efficiency of the technique and examples of differentially expressed genes. The expression of different candidate genes was compared in either unsynchronized (UN), growth-arrested (GA), G1 phase (G1), G1/S transition (G1/S) or G2 phase (G2) cultures of Nb2 cells. The efficiency of the technique was controlled using equivalent amounts of rabbit α and β globin cDNAs, which were included on the nylon membranes along with the candidate gene targets. The two globin cDNAs were added in different amounts (50 or 150 ng) to each cDNA population before co-amplification. For each population tested, filters were hybridized with both globin probes, but only representative hybridization signals are shown, for either α (Panel A) or β (Panel B) globin. Numbers 1 and 3 represent the relative amount of the control rabbit globin cDNAs added, and are reflected in the differences in the intensity of the hybridization signals. Thus, a threefold difference in the quantity of a particular transcript in the initial population generates a clear difference in the intensity of the corresponding hybridization signals. Rows C, D, [...]

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