The genome of the model beetle and pest Tribolium castaneum (original) (raw)

Red flour beetle (Tribolium castaneum): From population genetics to functional genomics

Veterinary World, 2018

Tribolium castaneum is a small and low maintenance beetle that has emerged as a most suitable insect model for studying developmental biology and functional genetic analysis. Diverse population genetic studies have been conducted using Tribolium as the principal model to establish basic facts and principles of inbreeding experiments and response to the selection and other quantitative genetics fundamentals. The advanced molecular genetic studies presently focused on the use of Tribolium as a typical invertebrate model for higher diploid eukaryotes. After a whole genome sequencing of Tribolium, many areas of functional genomics were unraveled, which enabled the use of it in many technical approaches of genomics. The present text reviews the use of Tribolium in techniques such as RNAi, transgenic studies, immune priming, immunohistochemistry, in situ hybridization, gene sequencing for characterization of microRNAs, and gene editing using engineered endonuclease. In contrast to Drosophila, the T. castaneum holds a robust systemic RNAi response, which makes it an excellent model for comparative functional genetic studies.

The red flour beetle's large nose: An expanded odorant receptor gene family in Tribolium castaneum

Insect Biochemistry and Molecular Biology, 2008

The Tribolium castaneum genome sequence reveals a large number of odorant receptor (Or) genes compared to those found in other insects whose olfactory genomes have been studied-341 Or genes and pseudogenes, encoding 259 intact odorant receptor proteins. An RT-PCR study of larvae and adults revealed that only 145 (64%) of 233 genes with successful genomic DNA amplifications were expressed. No expression of the other 87 genes was detected at any age, suggesting either that these genes are not expressed in this particular strain, or that they are induced only in certain environmental or developmental conditions. TcOR1, the ortholog of the Drosophila Or83b (DmOr83b) gene, which is required for the function of olfactory receptor proteins in Drosophila, was expressed in extracts from adult and larval heads and in extracts from adult bodies. Expression of 41 TcOr genes was detected in extracts from larval head tissue and 111 in extracts from adult head tissue (both figures exclude TcOr1). Twenty-eight TcOrs were detected only in adult bodies. Beetle pupae were injected with TcOr1 dsRNA; unlike sham-injected and control beetles, these knock-down beetles showed no significant response to the Tribolium aggregation pheromone, supporting the hypothesis that TcOr1 plays a similar decisive role in olfaction to DmOr83b. The substantial number of Ors poses the question of why Tribolium has such a large olfactory receptor repertoire, and underlines the need for more studies of the natural history of this species.

Rationale to sequence the genome of the red flour beetle, Tribolium castaneum

Overview: In a world of worthy candidates, there are several compelling reasons to sequence the genome of the red flour beetle Tribolium castaneum. First and foremost, Tribolium is one of the most sophisticated genetic model organisms among all higher eukaryotes. Among arthropods, only Drosophila offers greater power and flexibility of genetic manipulation. Second, the Tribolium genome sequence will provide an informative link when direct comparisons between human and fruit fly sequences are unproductive. Third, as a member of the most primitive order of holometabolous insects, the Coleoptera, it is in a key phylogenetic position to inform us about the genetic innovations that accompanied the evolution of higher forms with more complex development. Fourth, Coleoptera is the largest and most species diverse of all eukaryotic orders and Tribolium offers the only genetic model for this profusion of medically and economically important species. Analysis of the Tribolium genome will faci...

iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum

Nucleic acids research, 2015

The iBeetle-Base (http://ibeetle-base.uni-goettingen.de) makes available annotations of RNAi phenotypes, which were gathered in a large scale RNAi screen in the red flour beetle Tribolium castaneum (iBeetle screen). In addition, it provides access to sequence information and links for all Tribolium castaneum genes. The iBeetle-Base contains the annotations of phenotypes of several thousands of genes knocked down during embryonic and metamorphic epidermis and muscle development in addition to phenotypes linked to oogenesis and stink gland biology. The phenotypes are described according to the EQM (entity, quality, modifier) system using controlled vocabularies and the Tribolium morphological ontology (TrOn). Furthermore, images linked to the respective annotations are provided. The data are searchable either for specific phenotypes using a complex 'search for morphological defects' or a 'quick search' for gene names and IDs. The red flour beetle Tribolium castaneum ha...