Automated method for modeling seven-helix transmembrane receptors from experimental data (original) (raw)
Modeling the 3D structure of rhodopsin using a de novo approach to build G-protein-coupled receptors
Maria Cartenì
The Journal of Physical …, 1999
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Novel approach to computer modeling of seven-helical trans-membrane proteins: Current progress in the test case of bacteriorhodopsin
Garland Marshall
2001
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Modelling the structures of G protein-coupled receptors aided by three-dimensional validation
Siavoush Dastmalchi
BMC Bioinformatics, 2008
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Membrane proteins structures: A review on computational modeling tools
Irina Moreira
Biochimica et Biophysica Acta (BBA) - Biomembranes
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An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors 1 1Edited by R. Huber
Gebhard F X Schertler
Journal of Molecular Biology, 1997
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On the use of the transmembrane domain of bacteriorhodopsin as a template for modeling the three-dimensional structure of guanine nucleotide-binding regulatory protein-coupled receptors
Harel Weinstein
Proceedings of the National Academy of Sciences, 1992
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An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors
Gebhard F X Schertler, Vinzenz Unger
Journal of Molecular Biology, 1997
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Homology-based Modeling of Rhodopsin-like Family Members in the Inactive State: Structural Analysis and Deduction of Tips for Modeling and Optimization
Mahmoud Rayan
Molecular informatics, 2017
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Ab initio computational modeling of loops in G-protein-coupled receptors: Lessons from the crystal structure of rhodopsin
Harel Weinstein
Proteins: Structure, Function, and Bioinformatics, 2006
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Combined biophysical and biochemical information confirms arrangement of transmembrane helices visible from the three-dimensional map of frog rhodopsin
Pawel Herzyk, Mohammad Afshar
Journal of Molecular Biology, 1998
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First Principles Predictions of the Structure and Function of G-Protein-Coupled Receptors: Validation for Bovine Rhodopsin
William Goddard
Biophysical Journal, 2004
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Solution structure of the sixth transmembrane helix of the G-protein-coupled receptor, rhodopsin11This work was supported by National Institutes of Health Grant EY03328 and in part by CA16056
Ming-Chung Tseng
Biochimica et Biophysica Acta (BBA) - Biomembranes, 2000
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Three-Dimensional Model for Meta-II Rhodopsin, an Activated G-Protein-Coupled Receptor †
Garland Marshall
Biochemistry, 2003
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Structures of the transmembrane helices of the G-protein coupled receptor, rhodopsin
Madan Katragadda
Journal of Peptide Research, 2001
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Rhodopsin crystal: new template yielding realistic models of G-protein-coupled receptors?
Bernard Maigret
Trends in Pharmacological Sciences, 2003
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Three-Dimensional Structure of the Highly Conserved Seventh Transmembrane Domain of G-Protein-Coupled Receptors
Gérard Chassaing
European Journal of Biochemistry, 1994
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Computational Structural Analysis of C-Terminal Residues of Proteins Containing Transmembrane Regions
Konda Mani Saravanan
International Journal for Computational Biology, 2014
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Method To Assess Packing Quality of Transmembrane α-Helices in Proteins. 2. Validation by “Correct vs Misleading” Test
Alexander Arseniev
Journal of Chemical Information and Modeling, 2007
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Influence of assignment on the prediction of transmembrane helices in protein structures
Alexandre de Brevern
Amino Acids, 2010
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A Method to Assess Correct/Misfolded Structures of Transmembrane Domains of Membrane Proteins
Anton O Chugunov
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Method to Assess Packing Quality of Transmembrane α-Helices in Proteins. Part 2. Validation by “Correct vs. Misleading” Test
Anton O Chugunov
ChemInform, 2007
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Three-Dimensional Structure of the Cytoplasmic Face of the G Protein Receptor Rhodopsin †
Ming-Chung Tseng
Biochemistry, 1997
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A novel method for packing quality assessment of transmembrane α-helical domains in proteins
V. Novoseletsky
Biochemistry (Moscow), 2007
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[19] Integrated methods for the construction of three-dimensional models and computational probing of structure-function relations in G protein-coupled receptors
Harel Weinstein
Methods in Neurosciences, 1995
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Successful prediction of the intra- and extracellular loops of four G-protein-coupled receptors
Thijs Beuming
Proceedings of the National Academy of Sciences of the United States of America, 2011
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A Novel Scoring Function for Predicting the Conformations of Tightly Packed Pairs of Transmembrane α-Helices
Nir Ben-tal
Journal of Molecular Biology, 2002
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Optimal potentials for predicting inter-helical packing in transmembrane proteins
Enzo Orlandini
Proteins: Structure, Function, and Genetics, 2002
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The transmembrane 7-alpha-bundle of rhodopsin: distance geometry calculations with hydrogen bonding constraints
Henry I. Mosberg
Biophysical Journal, 1997
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Modeling the possible conformations of the extracellular loops in G-protein-coupled receptors
Thomas Baranski, Garland Marshall
Proteins: Structure, Function, and Bioinformatics, 2010
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Bound conformations for ligands for G-protein coupled receptors
Garland Marshall
Letters in Peptide Science, 1999
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Toward computational determination of peptide-receptor structure
Sandor Vajda
Protein Science, 1993
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