Nucleobase catalysis in the hairpin ribozyme (original) (raw)

Ionic requirements for RNA binding, cleavage, and ligation by the hairpin ribozyme

John Burke

Biochemistry, 1993

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A guanine nucleobase important for catalysis by the VS ribozyme

Timothy D Wilson

The EMBO journal, 2007

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Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme

Timothy D Wilson

Proceedings of the National Academy of Sciences, 2010

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Base and Sugar Requirements for RNA Cleavage of Essential Nucleoside Residues in Internal Loop B of the Hairpin Ribozyme: Implications for Secondary Structure

Leonid Beigelman

Nucleic Acids Research, 1996

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Purine Functional Groups in Essential Residues of the Hairpin Ribozyme Required for Catalytic Cleavage of RNA

Mohinder Singh

Biochemistry, 1995

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Binding and cleavage of nucleic acids by the "hairpin" ribozyme

John Burke

Biochemistry, 1991

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Kinetic Mechanism of the Hairpin Ribozyme

John Burke

Journal of Biological Chemistry, 1997

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QM/MM Studies of Hairpin Ribozyme Self-Cleavage Suggest the Feasibility of Multiple Competing Reaction Mechanisms

Vojtěch Mlýnský, Nils Walter

The Journal of Physical Chemistry B, 2011

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Structural basis for heterogeneous kinetics: Reengineering the hairpin ribozyme

Nils Walter

Proceedings of the National Academy of Sciences, 1998

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Structural effects of nucleobase variations at key active site residue Ade38 in the hairpin ribozyme

Joseph Wedekind

RNA (New York, N.Y.), 2008

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Molecular dynamics suggest multifunctionality of an adenine imino group in acid-base catalysis of the hairpin ribozyme

Nils Walter

RNA, 2009

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Nucleobase modification by an RNA enzyme

Phuong Nguyen

Nucleic acids research, 2016

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Faculty of 1000 evaluation for Capturing hammerhead ribozyme structures in action by modulating general base catalysis

Pascale Legault

F1000 - Post-publication peer review of the biomedical literature, 2008

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The hairpin ribozyme: structure, assembly and catalysis

John Burke

Current Opinion in Chemical Biology, 1998

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Structural Basis for the Guanosine Requirement of the Hairpin Ribozyme †

John Burke

Biochemistry, 1999

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In Vitro Selection of Adenine-dependent Hairpin Ribozymes

Massimiliano Meli

Journal of Biological Chemistry, 2003

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Ribozymes: the characteristics and properties of catalytic RNAs

Kyle Tanner

FEMS Microbiology Reviews, 1999

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Capturing Hammerhead Ribozyme Structures in Action by Modulating General Base Catalysis

Young-In Chi

PLoS Biology, 2008

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independent hairpin ribozyme catalysis in hydrated RNA films

Attila Seyhan

2000

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Single-Atom Imino Substitutions at A9 and A10 Reveal Distinct Effects on the Fold and Function of the Hairpin Ribozyme Catalytic Core

Robert Spitale

Biochemistry, 2009

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Thirty-five years of research into ribozymes and nucleic acid catalysis: where do we stand today?

Bettina Appel

F1000Research, 2016

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Functional involvement of G8 in the hairpin ribozyme cleavage mechanism

Ken Hampel

The EMBO Journal, 2001

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RNA hairpin loops repress protein synthesis more strongly than hammerhead ribozymes

Trevor Lockett

European Journal of Biochemistry, 1999

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Ribozyme Catalysis Revisited: Is Water Involved?

Nils Walter

Molecular Cell, 2007

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The Hairpin Ribozyme

John Burke

Nucleic Acids and Molecular Biology, 1994

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An Active-Site Guanine Participates in glmS Ribozyme Catalysis in Its Protonated State

Julia Viladoms

Journal of the American Chemical Society, 2011

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Model for General Acid−Base Catalysis by the Hammerhead Ribozyme: pH−Activity Relationships of G8 and G12 Variants at the Putative Active Site †

John Burke

Biochemistry, 2005

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Chemical models for ribozyme action

Tuomas Lönnberg, Harri Lonnberg

Current Opinion in Chemical Biology, 2005

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In vitro selection of active hairpin ribozymes by sequential RNA-catalyzed cleavage and ligation reactions

John Burke

Genes & Development, 1992

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Metal ions play a passive role in the hairpin ribozyme catalysed reaction

Jane Grasby

Nucleic acids research, 1997

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An improved version of the hairpin ribozyme functions as a ribonucleoprotein complex

John Burke

Biochemistry, 1995

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Adenine, a hairpin ribozyme cofactor - high-pressure and competition studies

Christophe Simian, Guy Hervé, Marie Zitouni, Marie-christine Maurel

FEBS Journal, 2009

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Sequence elements outside the catalytic core of natural hairpin ribozymes modulate the reactions differentially

Gerhard Steger

Biological Chemistry, 2011

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