The PNA-DNA hybrid I-motif: implications for sugar-sugar contacts in i-motif tetramerization (original) (raw)

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Journal of Molecular Biology, 2004

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Targeted Chemical Wedges Reveal the Role of Allosteric DNA Modulation in Protein−DNA Assembly

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Fundamental aspects of the nucleic acid i-motif structures

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A dimeric DNA interface stabilized by stacked A · (G · G · G · G) · A hexads and coordinated monovalent cations 1 1 Edited by P. E. Wright

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Journal of Molecular Biology, 2000

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A dimeric DNA interface stabilized by stacked A · (G · G · G · G) · A hexads and coordinated monovalent cations1

Eugene Skripkin

Journal of Molecular Biology, 2000

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Design and NMR Study of an Immobile DNA Four-Way Junction Containing 38 Nucleotides

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Assessing the influence of pH and cationic strength on i-motif DNA structure

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A dimeric DNA interface stabilized by stacked A · (G · G · G · G) · A hexads and coordinated monovalent cations

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i-Motif DNA: structural features and significance to cell biology

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Highly Polar Carbohydrates Stack onto DNA Duplexes via CH/π Interactions

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PH-Toggled DNA Architectures: Reversible Assembly of Three-Way Junctions Into Extended 1D Architectures Through A-Motif Formation

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Sequence-Specific Positions of Water Molecules at the Interface between DNA and Minor Groove Binders

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Linking pH, Temperature, and K+ Concentration for DNA i-Motif Formation

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An Electrochemical Probe of DNA Stacking in an Antisense Oligonucleotide Containing a C3′-endo-Locked Sugar

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Structure of i-Motif/Duplex Junctions at Neutral pH

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Role of stacking interactions in the binding sequence preferences of DNA bis-intercalators: insight from thermodynamic integration free energy simulations

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Parallel DNA double helices incorporating isoG or m5isoC bases studied by FTIR, CD and molecular modeling

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Sugar conformation of a stereospecific 2'-R or 2'-S deuterium-labeled DNA decamer studied with proton-proton J coupling constants

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Overall structure and sugar dynamics of a DNA dodecamer from homo- and heteronuclear dipolar couplings and 31P chemical shift anisotropy

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Kinetic hybrid i-motifs: Intercepting DNA with RNA to form a DNA2–RNA2 i-motif

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Motifs in nucleic acids: Molecular mechanics restraints for base pairing and base stacking

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Journal of Computational Chemistry, 2003

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Structures of the kinetically trapped i-motif DNA intermediates

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Phys. Chem. Chem. Phys., 2016

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Structure and Conversion Kinetics of a Bi-stable DNA i-motif: Broken Symmetry in the [d(5mCCTCC)]4 Tetramer

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The energetics of i-DNA tetraplex structures formed intermolecularly by d(TC5) and intramolecularly by d[(C5T3)3C5]

Horst Klump

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Understanding the effect of the nature of the nucleobase in the loops on the stability of the i-motif structure

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