Ions in Solutions and Protein Channels (original) (raw)

The Simulation of Ionic Charge Transport in Biological Ion Channels: an Introduction to Numerical Methods

Shela Aboud

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A MATHEMATICAL MODEL FOR CHARGE DISTRIBUTIONS IN EXTERNAL MICRO-ENVIRONMENT OF ION CHANNELS

Ali Shoaib

Pak J Physiol, 2011

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Charge fluctuations and boundary conditions of biological ion channels: effect on the ionic transition rate

Igor Kaufman

2009

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Theoretical and Computational Models of Ion Channels

Benoit Roux

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Structure and dynamics of one-dimensional ionic solutions in biological transmembrane channels

A. Skerra

Biophysical Journal, 1987

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Tests of Continuum Theories as Models of Ion Channels. I. Poisson−Boltzmann Theory versus Brownian Dynamics

Ben Corry

Biophysical Journal, 2000

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Theoretical and computational models of biological ion channels

Benoît Roux

2004

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Proteins, channels and crowded ions

Bob Eisenberg

Biophysical Chemistry, 2003

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The ionic selectivity of large protein ion channels

Antonio Alcaraz López

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Towards a reliable model of ion channels: three-dimensional simulation of ionic solutions

Zeev Schuss

2000

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Three-Dimensional Continuum Simulations of Ion Transport Through Biological Ion Channels: Effect of Charge Distribution in the Constriction Region of Porin

U. Ravaioli

2002

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Computational Issues in Modeling Ion Transport in Biological Channels: Self-Consistent Particle-Based Simulations

Shela Aboud

Journal of Computational Electronics, 2003

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Validity of the Electrodiffusion Model for Calculating Conductance of Simple Ion Channels

Michael Wilson

The journal of physical chemistry. B, 2016

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PNP Equations with Steric Effects: A Model of Ion Flow through Channels

Bob Eisenberg

The Journal of Physical Chemistry B, 2012

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Charges, currents, and potentials in ionic channels of one conformation

Robert Eisenberg

Biophysical Journal, 1993

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Electrodiffusion Model Simulation of Ionic Channels: 1D Simulations

Bob Eisenberg

Journal of Computational Electronics, 2004

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Physics of Ion Channels

Turgut Bastug

Journal of Biological Physics, 2003

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Ion transport through biological channels

Jordi Faraudo

Contributions to science, 2016

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Simulation of Biological Ionic Channels by Technology Computer-Aided Design

U. Ravaioli

VLSI Design, 2001

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Mathematical models of ion transport through cell membrane channels

Jacek Miekisz

Mathematica Applicanda, 2014

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Flux, coupling, and selectivity in ionic channels of one conformation

Robert Eisenberg

Biophysical Journal, 1993

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Entropy effects on the ion-diffusion rate in transmembrane protein channels

Jürgen Brickmann

Biophysical Chemistry, 1983

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A Review of Mathematical Modeling, Simulation and Analysis of Membrane Channel Charge Transport

Edwin Spencer

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Mobility and solvation of ions in channels

Ruth Lynden-bell

The Journal of Chemical Physics, 1996

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Simulations of ion current in realistic models of ion channels: The KcsA potassium channel

Anton Burykin

Proteins-structure Function and Bioinformatics, 2002

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Charge density identification in ion channels

Gershon Wolansky

The Journal of Chemical Physics, 2010

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Ion Permeation through the α-Hemolysin Channel: Theoretical Studies Based on Brownian Dynamics and Poisson-Nernst-Plank Electrodiffusion Theory

Benoit Roux

Biophysical Journal, 2004

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Numerical methods for a Poisson-Nernst-Planck-Fermi model of biological ion channels

Bob Eisenberg

Physical review. E, Statistical, nonlinear, and soft matter physics, 2015

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Continuum electrostatic calculations of the pKa of ionizable residues in an ion channel: Dynamic vs. static input structure

Marcel Aguilella-Arzo

The European Physical Journal E, 2010

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Ion Selectivity of a Biological Channel at High Concentration Ratio: Insights on Small Ion Diffusion and Binding

Marcel Aguilella

Journal of Physical Chemistry B, 2009

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