The retinal chromophore/chloride ion pair: Structure of the photoisomerization path and interplay of charge transfer and covalent states (original) (raw)
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Proceedings of the National Academy of Sciences, 2005
Ab initio multireference second-order perturbation theory computations are used to explore the photochemical behavior of two ion pairs constituted by a chloride counterion interacting with either a rhodopsin or bacteriorhodopsin chromophore model (i.e., the 4-cis-␥-methylnona-2,4,6,8-tetraeniminium and all-trans-nona-2,4,6,8tetraeniminium cations, respectively). Significant counterion effects on the structure of the photoisomerization paths are unveiled by comparison with the paths of the same chromophores in vacuo. Indeed, we demonstrate that the counterion (i) modulates the relative stability of the S0, S1, and S2 energy surfaces leading to an S1 isomerization energy profile where the S1 and S2 states are substantially degenerate; (ii) leads to the emergence of significant S 1 energy barriers along all of the isomerization paths except the one mimicking the 11-cis 3 all-trans isomerization of the rhodopsin chromophore model; and (iii) changes the nature of the S1 3 S0 decay funnel that becomes a stable excited state minimum when the isomerizing double bond is located at the center of the chromophore moiety. We show that these (apparently very different) counterion effects can be rationalized on the basis of a simple qualitative electrostatic model, which also provides a crude basis for understanding the behavior of retinal protonated Schiff bases in solution. ab initio ͉ counterion ͉ conical intersection ͉ protonated Schiff base R etinal proteins (1-4) include the retina visual pigment rhodop
Theoretical Chemistry Accounts, 2007
CASPT2//CASSCF/6-31G* computations are used on the singlet S 1 and S 2 states to map the photoisomerization process of the 11-cis retinal protonated Schiff base in vacuo and to characterize its optical properties. It is shown that the spectroscopic observations recorded in Rhodopsin are reproduced quite well, calling for a substantially neutral effect of the protein. Furthermore, a rationale is proposed for the unreactive population recently observed in Rhodopsin, which is here addressed to the accessible S 2 state, behaving as a trap. The experimental transient absorption and (absorption-wavelength dependent) emission are discussed and interpreted under the light of this novel model. Finally, a planarization of the β-ionone ring is observed on S 1 , which may cause a steric lever effect into the protein pocket, thus assisting photoisomerization Electronic supplementary material The online version of this article (catalysis. The reported results constitute a solid reference for further studies aimed to rationalize the effect of the environment on the photochemical reactivity of retinal chromophores.
Journal of the American Chemical Society, 2002
Multiconfigurational second-order perturbation theory computations and reaction path mapping for the retinal protonated Schiff base models all-trans-nona-2,4,6,8-tetraeniminium and 2-cis-nona-2,4,6,8tetraeniminium cation demonstrate that, in isolated conditions, retinal chromophores exhibit at least three competing excited-state double bond isomerization paths. These paths are associated with the photoisomerization of the double bonds in positions 9, 11, and 13, respectively, and are controlled by barriers that favor the position 11. The computations provide a basis for the understanding of the observed excitedstate lifetime in both naturally occurring and synthetic chromophores in solution and, tentatively, in the protein environment. In particular, we provide a rationalization of the excited-state lifetimes observed for a group of locked retinal chromophores which suggests that photoisomerization in bacteriorhodopsin is the result of simultaneous specific "catalysis" (all-trans f 13-cis path) accompanied by specific "inhibition" (all-trans f 11-cis path). The nature of the S 1 f S0 decay channel associated with the three paths has also been investigated at the CASSCF level of theory. It is shown that the energy surfaces in the vicinity of the conical intersection for the photoisomerization about the central double bond of retinal (position 11) and the two corresponding lateral double bonds (positions 9 and 13) are structurally different.
Journal of Photochemistry and Photobiology A: Chemistry, 2007
The effect of substitution on the intrinsic (i.e. in vacuo) photoisomerization ability of retinal chromophore models has been explored using CASPT2//CASSCF minimum energy path computations to map the S 1 photoisomerization paths of two substituted minimal models of the retinal chromophore: the 2-cis-penta-2,4-dieniminium and the all-trans-epta-2,4,6-trieniminium cations, which have been modified using fluorine or methoxyl substituents as representative examples of electron-withdrawing and electron-releasing groups, respectively. A systematic analysis has been performed involving substitutions in all the possible positions along the chain. It is shown that the photochemical reactivity and photoisomerization efficiency of these systems may be tuned or indeed changed, although this effect strongly depends on the position of the substituent. In particular, we have shown that (i) most of the systems preserves qualitatively the reactivity of the parent (i.e. unsubstituted) compound; (ii) substitution at positions C4 or C6 leads to a different relaxed excited state structure of the chromophore and in general to a very flat photoisomerization path (or to a tiny S 1 energy barrier in some cases); (iii) the nature of the TICT state (i.e. the S 1 → S 0 decay funnel) may be turned from a conical intersection into an excited state minimum; (iv) for the C4 methoxy-substituted system the isomerization path as well as the S 1 /S 0 decay funnel involve an unusual torsional angle. Thus, substitution turns out to be a good tool not only to tune the optical properties (i.e. the absorption and emission features) of the chromophore (as we have already shown in a previous work: I. Conti, F. Bernardi, G. Orlandi, M. Garavelli, Mol. Phys. 104 (2006) 915-924), but it may also play a crucial role in tuning and controlling photoisomerization selectivity and efficiency, affecting excited state lifetime and reaction rate. A rationale for these effects is presented, which provides a basis for understanding reactivity properties and the intrinsic photochemical behavior of substituted retinal chromophores.
Light activation of the isomerization and deprotonation of the protonated Schiff base retinal
Journal of Molecular Modeling
We perform an ab initio analysis of the photoisomerization of the protonated Schiff base of retinal (PSB-retinal) from 11-cis to 11-trans rotating the C10-C11=C12-C13 dihedral angle from 0° (cis) to -180° (trans). We find that the retinal molecule shows the lowest rotational barrier (0.22 eV) when its charge state is zero as compared to the barrier for the protonated molecule which is ∼0.89 eV. We conclude that rotation most likely takes place in the excited state of the deprotonated retinal. The addition of a proton creates a much larger barrier implying a switching behavior of retinal that might be useful for several applications in molecular electronics. All conformations of the retinal compound absorb in the green region with small shifts following the dihedral angle rotation; however, the Schiff base of retinal (SB-retinal) at trans-conformation absorbs in the violet region. The rotation of the dihedral angle around the C11=C12 π-bond affects the absorption energy of the retinal and the binding energy of the SB-retinal with the proton at the N-Schiff; the binding energy is slightly lower at the trans-SB-retinal than at other conformations of the retinal. Figure a, Rhodopsin protein in cone and rod cells is able to recognize colors. b, Rhodopsin photoreceptor, a transmembrane protein, has a retinal chromophore joined covalently to Lys 296 through a protonated Schiff base linkage (cis-PSB-retinal). In dark conditions, retinal is in cis-conformation. c, Structure of PSB-retinal where the dihedral angle rotates along the orange C11=C12 bond to calculate the potential energy surface of the ground state (S0) and excited state (S1). d, Potential energy surface at ground state (S0) and excited state (S1) for ethene
Biochemistry, 2002
Density functional theory (DFT) calculations based on the self-consistent-charge tight-binding approximation have been performed to study the influence of the protein pocket on the 3-dimensional structure of the 11-cis-retinal Schiff base (SB) chromophore. Starting with an effectively planar chromophore embedded in a protein pocket consisting of the 27 next-nearest amino acids, the relaxed chromophore geometry resulting from energy optimization and molecular dynamics (MD) simulations has yielded novel insights with respect to the following questions: (i) The conformation of the -ionone ring. The protein pocket tolerates both conformations, 6-s-cis and 6-s-trans, with a total energy difference of 0.7 kcal/mol in favor of the former. Of the two possible 6-s-cis conformations, the one with a negative twist angle (optimized value: -35°) is strongly favored, by 3.6 kcal/mol, relative to the one in which the dihedral is positive. (ii) Out-of-plane twist of the chromophore. The environment induces a nonplanar helical deformation of the chromophore, with the distortions concentrated in the central region of the chromophore, from C10 to C13. The dihedral angle between the planes formed by the bonds from C7 to C10 and from C13 to C15 is 42°. (iii) The absolute configuration of the chromophore. The dihedral angle about the C12-C13 bond is +170°from planar s-cis, which imparts a positive helicity on the chromophore, in agreement with earlier considerations based on theoretical and spectroscopic evidence. a Energy in kcal/mol relative to 1. b Angle between C7-C10 and C15-N planes, experimental value 42°( 10°.
Photochemistry of Visual Pigment Chromophore Models by Ab Initio Molecular Dynamics
The Journal of Physical Chemistry B, 2007
Ab initio excited-state molecular dynamics calculations have been performed to study the effect of methyl substitution and chromophore distortion on the photoreaction of different four-double-bond retinal model chromophores. Randomly distributed starting geometries were generated by zero-point energy sampling; after Franck-Condon excitation the reaction was followed on the S 1 surface. For determining the photoproduct and its configuration, a simplified approachstorsion angle followingsis discussed and applied. We find that chromophore distortion significantly affects the outcome of the photoreaction: with dihedral angles taken from the rhodopsin-embedded 11-cis-retinal chromophore, the reaction rate of the model chromophore is increased by a factor of 3 compared to that of the relaxed chromophore. Also, the reaction proceeds in a completely stereoselective manner involving only the cis double bond and with a minimum quantum yield of 72%. Bond torsion is more effective than methyl substitution for fast and selective photochemistry, which is in agreement with photophysical measurements on rhodopsin analogues. We conclude that apart from the geometric distortions caused by the protein pocket it is not necessary to postulate other specific interactions between the protein and the chromophore to effect the selective and ultrafast photoreaction in rhodopsin.