Needs Assessment for Scientific Visualization of Multivariate, High-Dimensional Microarray Data (original) (raw)
Abstract
The explosive growth in biological data (currently GenBank contains over 44 billion base pa irs and over 40 million sequences) mandates an increasi ng need for sophisticated mathematical and computational methods (1)and software environments capable of handling the complexities and sizes of these various "omic" datasets (2). This is particul arly true for microarray data. Microarray technolo gy allows for
Loading Preview
Sorry, preview is currently unavailable. You can download the paper by clicking the button above.
References (17)
- Thomas D. Wu. "Analyzing gene expression data from DNA microarrays to identify candidate genes." J Pathol 195:53-65, 2001.
- H. Ge, A. Walhout and M. Vidal. "Integrating 'omic' information: a bridge between genomics and systems biology." Trends in Genetics 19:551-560, 2003.
- Patrick O. Brown, and David Botstein. "Exploring the new world of the genome with DNA microarrays." Nature Genetics 21 (Suppl.):33-37, Jan 1999.
- David J. Duggan, Michael Brittner, Yidong Chen, Paul Meltzer and Jeffery M. Trent. "Expression profiling using cDNA microarrays." Nature Genetics 21:10-14, Jan 1999.
- Izet M. Kapetanovic, Simon Rosenfeld and Grant Izmirlian. "Overview of commonly used bioinformatics methods and their applications." Ann. N.Y. Acad. Sci. 1020:10-21, 2004.
- Mike Eisen. "Making biological sense of genome-wide expression data." Nature Genetics 23:18-18, 1999.
- Daniel R. Masys. "Linking microarray data to the literature." Nature Genetics 28:9-10, May 2001.
- Roger Ekins and Frederick Chu. "Microarrays: their origins and applications." Trends Biotechnol. 17:217-218, Jun 1999.
- Danh V. Nguyen, A. Bulak Arpat, Naisyn Wang and Raymond J. Carroll. "DNA microarray experiments: biological and technological aspects." Biometrics 58:701-717, Dec 2002.
- D. K. Liu, B. Yao, B. Fayz, D. D. Womble and S. A. Krawetz. "Comparative evaluation of microarray analysis software." Molecular Biotechnology 26:225-232, 2004.
- Purvi Saraiya, Chris North and Karen Duca. "An evaluation of microarray visualization tools for biological insight." IEEE Symposium on Information Visualization.
- Zhongming Chen and Lin Liu. "RealSpot: Software validating results from DNA microarray data analysis with spot images." Physiol. Genomics 21:284-291, Feb 2005.
- Yee Hwa Yang, Michael J. Buckley and Terence P. Speed. "Analysis of cDNA microarray images." Briefings in Bioinformatics 2(4):3412-349, Dec 2001.
- M. Gardiner-Garden and T. G. Littlejohn. "A comparison of microarray databases." Briefings in Bioinformatics 2(2):143-158, May 2001.
- Purvesh Khatri and Sorin Draghici. "Ontological analysis of gene expression data: current tools, limitations, and open problems." Bioinformatics 21(18):3587-3595, Jun 2005.
- Wei Pan. "A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments." Bioinformatics 18(4):,546-554, Dec 2001.
- Ahmed Fadiel and Frederick Naftolin. "Microarray applications and challenges: a vast array of possibilities." International Archives of Bioscience 1111-1121, 2003.