Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes (original) (raw)

Hydrolytic cleavage by a group I intron ribozyme is dependent on RNA structures not important for splicing

Asa Birgisdottir

European Journal of Biochemistry, 2004

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Flanking sequences with an essential role in hydrolysis of a self-cleaving group I-like ribozyme

Christer Einvik

Nucleic Acids Research, 2000

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Speciation of a group I intron into a lariat capping ribozyme

E. Westhof

Proceedings of the National Academy of Sciences, 2014

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A Mechanistic Framework for the Second Step of Splicing Catalyzed by the Tetrahymena Ribozyme †

Douglas Turner

Biochemistry, 1996

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An mRNA Is Capped by a 2', 5' Lariat Catalyzed by a Group I-Like Ribozyme

Henrik Nielsen

Science, 2005

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The P5abc Peripheral Element Facilitates Preorganization of the Tetrahymena Group I Ribozyme for Catalysis †

Mark Engelhardt

Biochemistry, 2000

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Mechanistic Investigations of a Ribozyme Derived from the Tetrahymena Group I Intron: Insights into Catalysis and the Second Step of Self-Splicing †

Rui Mei

Biochemistry, 1996

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Two group I ribozymes with different functions in a nuclear rDNA intron

Christer Einvik

The EMBO Journal

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Enhancing the Second Step of the Trans Excision-Splicing Reaction of a Group I Ribozyme by Exploiting P9.0 and P10 for Intermolecular Recognition

Joy Sinha

Biochemistry, 2004

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New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the ribozyme

Eric Westhof

Chem Biol, 1996

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The new world of ribozymes

Luc Jaeger

Current Opinion in Structural Biology, 1997

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Modifications and deletions of helices within the hairpin ribozyme-substrate complex: An active ribozyme lacking helix 1

John Burke

RNA, 2004

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Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites

Christer Einvik

RNA, 1998

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The ribozyme core of group II introns: a structure in want of partners

Eric Westhof

Trends in Biochemical Sciences, 2009

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Novel system for analysis of group I 3' splice site reactions based on functional trans -interaction of the P1/P10 reaction helix with the ribozyme's catalytic core

John Burke

Nucleic Acids Research, 1995

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Requirement of Helix P2.2 and Nucleotide G1 for Positioning the Cleavage Site and Cofactor of the glmS Ribozyme

Daniel Klein

Journal of Molecular Biology, 2007

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Evolution in vitro: analysis of a lineage of ribozymes

N. Lehman

Current Biology, 1993

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Influence of substrate structure on in vitro ribozyme activity of a group II intron

Guillaume Chanfreau

Rna-a Publication of The Rna Society, 1998

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Helix-length compensation studies reveal the adaptability of the VS ribozyme architecture

Pascale Legault

Nucleic Acids Research, 2012

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Group II Introns: Structure and Catalytic Versatility of Large Natural Ribozymes

Karola Lehmann

Critical Reviews in Biochemistry and Molecular Biology, 2003

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Engineering a family of synthetic splicing ribozymes

Thomas Knight

Nucleic Acids Research, 2010

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New loop-loop tertiary interactions in self-splicing introns of subgroup IC and ID: a complete 3D model of the Tetrahymena thermophila ribozyme

Eric Westhof

Chemistry & Biology, 1996

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Identification and characterization of a short 2'-3' bond-forming ribozyme

Monika Konarska

RNA, 2008

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MOLECULAR RECOGNITION PROPERTIES AND KINETIC CHARACTERIZATION OF TRANS EXCISION-SPLICING REACTION CATALYZED BY A GROUP I INTRON-DERIVED RIBOZYME

Joy Sinha

2006

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Ribozyme Catalysis from the Major Groove of Group II Intron Domain 5

Leonid Beigelman

Molecular Cell, 1998

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Natural and unnatural ribozymes: back to the primordial RNA world

Marie-christine Maurel

Research in microbiology, 2009

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Mutations at the guanosine-binding site of the Tetrahymena ribozyme also affect site-specific hydrolysis

Pascale Legault

Nucleic Acids Research, 1992

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Activating the branch-forming splicing pathway by reengineering the ribozyme component of a natural group II intron

MARIA CELIA BEZERRA COSTA

RNA (New York, N.Y.), 2016

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The global structure of the VS ribozyme

David Norman

The EMBO Journal, 2002

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Morphing the minimal and full-length hammerhead ribozymes: implications for the cleavage mechanism

NOE PENA

Biological Chemistry, 2007

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RNA Tertiary Interactions Mediate Native Collapse of a Bacterial Group I Ribozyme

Hüseyin Gökhan Çalışkan

Journal of Molecular Biology, 2005

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Structure and function of regulatory RNA elements: Ribozymes that regulate gene expression

Young-In Chi

Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 2009

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The Hairpin Ribozyme

John Burke

Nucleic Acids and Molecular Biology, 1994

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Molecular Recognition in a Trans Excision-Splicing Ribozyme: Non-Watson−Crick Base Pairs at the 5‘ Splice Site and ωG at the 3‘ Splice Site Can Play a Role in Determining the Binding Register of Reaction Substrates

Joy Sinha

Biochemistry, 2005

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Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif

Arthur Palmer

Nature Structural & Molecular Biology, 2004

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