Kevrekidis, Wilke & Mogias (2005). When DNA puts ecological works back on the right track: genetic assessment and distribution patterns of mudsnail populations in the Evros Delta lagoons (original) (raw)
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Marine Biology, 2000
The mudsnail taxon Hydrobia s.l. plays a major role in numerous ecological and parasitological studies. Yet, its taxonomy is confusing and its biogeography is poorly understood. A principal problem is that taxa of Hydrobia s.l. belong to morphostatic radiations – widely allopatric species radiations with little or no habitat diversification and a low level of anatomical change. So far, three morphostatic radiations can be identified within Hydrobia s.l.: Hydrobia s.s., Peringia, and Ventrosia. These radiations are identical with the putative genera of Hydrobia s.l. The purpose of the paper is to infer phylogenetic relationships within one of these radiations, Hydrobia s.s. in the northern Atlantic and western Mediterranean. A total of 22 populations, including topotypical populations of five commonly used taxa, were studied genetically using partial sequences of the mitochondrial cytochrome c oxidase subunit I gene. Based on molecular data and the species concept we define, the following species and subspecies were identified: Hydrobia acuta acuta (Draparnaud, 1805) [=H. minoricensis (Paladilhe, 1875)], H. acuta neglecta Muus, 1963, and H. glyca (Servain, 1880) (=H. joossei van Aartsen, Menkhorst and Gittenberger, 1984). One population from Djerba, Tunisia (Hydrobia sp. A) and one population from Mallorca, Spain (Hydrobia sp. B) are genetically distinct from all other taxa studied here. Both populations potentially represent new species. Due to the fact that only one population each has been studied, and so the degree of variation within these two taxa cannot be assessed, a final decision regarding their species level cannot yet be made.
1-The use of molecular data derived from multispecies assemblages in order to test ecological theory has only recently been introduced in the scientific literature. 2-As a first step, we compared patterns of abiotic environment, polychaeta distribution and their genetic diversity in five lagoon ecosystems in Greece. Our results confirm the hypothesis that higher genetic diversity is expected in the populations of the species occurring in the transitional waters rather than of those occurring in the marine environment. 3-Patterns derived from the polychaete community level and from the mitochondrial DNA (16S rRNA) obtained from Nephtys hombergii and Hediste diversicolor showed convergence, indicating the potential use of molecular matrices as surrogates in community analysis. 4-Finally, the high correlation between the genetic diversity pattern of H. diversicolor and the phosphorus concentration in the sediments may imply the broadening of the hierarchic-response-tostress hypothesis towards lower than species level.
Genetica, 2010
Coastal lagoons represent habitats with widely heterogeneous environmental conditions, particularly as regards salinity and temperature, which fluctuate in both space and time. These characteristics suggest that physical and ecological factors could contribute to the genetic divergence among populations occurring in coastal lagoon and opencoast environments. This study investigates the genetic structure of Holothuria polii at a micro-geographic scale across the Mar Menor coastal lagoon and nearby marine areas, estimating the mitochondrial DNA variation in two gene fragments, cytochrome oxidase I (COI) and 16S rRNA (16S). Dataset of mitochondrial sequences was also used to test the influence of environmental differences between coastal lagoon and marine waters on population genetic structure. All sampled locations exhibited high levels of haplotype diversity and low values of nucleotide diversity. Both genes showed contrasting signals of genetic differentiation (non-significant differences using COI and slight differences using 16S, which could due to different mutation rates or to differential number of exclusive haplotypes. We detected an excess of recent mutations and exclusive haplotypes, which can be generated as a result of population growth. However, selective processes can be also acting on the gene markers used; highly significant generalized additive models have been obtained considering genetic data from 16S gene and independent variables such as temperature and salinity.
How useful are the genetic markers in attempts to understand and manage marine biodiversity
The genetics of marine populations is a subject that has made little progress compared with the effort spent on the terrestrial environment. This is so despite ''applied'' aspects such as stock management, marine aquaculture, creation of reserves, conservation of the coastal zones, taxonomy, and protection of species. The crowded and dispersive marine environment, with its steep physical gradients, favours the existence of a planktonic larval stage for most species. The attendant high fecundity has important consequences for selection differentials and dispersal and therefore for the evolution of genetic structures. These features must be taken into account in order to understand the origin and maintenance of marine biodiversity and, in some cases, to manage it. In this article, after a definition of genetic diversity among other aspects of biodiversity, special features of the marine environment and processes governing genetic diversity are given together with the molecular tools required to study it. Then, an overview of the interesting scientific questions in marine biodiversity research is given concerning:Errorthe population structure as a function of dispersal systems and spatial constraints: gene flow and speciation in a dispersive environment, Errorthe phylogeography and historical biogeography of marine ecosystems; Errorthe functional and adaptive aspects of polymorphism: larval phase and genetic control of recruitment. Some uses of genetic diversity for assessment, conservation and protection purposes are also detailed. Organismal (specific) diversity does not enter the scope of the article. D
Journal of Molluscan Studies
Environmental heterogeneity in coastal lagoons is expected to facilitate local adaptation in response to different ecological conditions, causing significant genetic structuring within lagoon populations at a small scale and also differentiation between lagoons. However, these patterns and processes of genetic structuring are still poorly understood. The aims of our study were (1) to seek genetic structure at a small scale in Cerastoderma glaucum inside the Mar Menor coastal lagoon using a mitochondrial DNA marker (COI) that has previously detected genetic differentiation inside the lagoon in other species and (2) to evaluate the influence of extreme environmental conditions and habitat discontinuity on its genetic composition. The results indicate high levels of haplotype diversity and low values of nucleotide diversity. COI data provide evidence of significant population differentiation among some localities within the lagoon. Limited gene flow and unstable population dynamics (i.e. fluctuations in population size caused by local extinction and recolonization), probably due to the high environmental heterogeneity, could generate the small-scale genetic divergence detected between populations within the lagoon.
Journal of Molluscan Studies, 2013
Environmental heterogeneity in coastal lagoons is expected to facilitate local adaptation in response to different ecological conditions, causing significant genetic structuring within lagoon populations at a small scale and also differentiation between lagoons. However, these patterns and processes of genetic structuring are still poorly understood. The aims of our study were (1) to seek genetic structure at a small scale in Cerastoderma glaucum inside the Mar Menor coastal lagoon using a mitochondrial DNA marker (COI) that has previously detected genetic differentiation inside the lagoon in other species and (2) to evaluate the influence of extreme environmental conditions and habitat discontinuity on its genetic composition. The results indicate high levels of haplotype diversity and low values of nucleotide diversity. COI data provide evidence of significant population differentiation among some localities within the lagoon. Limited gene flow and unstable population dynamics (i.e. fluctuations in population size caused by local extinction and recolonization), probably due to the high environmental heterogeneity, could generate the small-scale genetic divergence detected between populations within the lagoon.
Frontiers in Zoology, 2013
Introduction We examined patterns of genetic divergence in 26 Mediterranean populations of the semi-terrestrial beachflea Orchestia montagui using mitochondrial (cytochrome oxidase subunit I), microsatellite (eight loci) and allozymic data. The species typically forms large populations within heaps of dead seagrass leaves stranded on beaches at the waterfront. We adopted a hierarchical geographic sampling to unravel population structure in a species living at the sea-land transition and, hence, likely subjected to dramatically contrasting forces. Results Mitochondrial DNA showed historical phylogeographic breaks among Adriatic, Ionian and the remaining basins (Tyrrhenian, Western and Eastern Mediterranean Sea) likely caused by the geological and climatic changes of the Pleistocene. Microsatellites (and to a lesser extent allozymes) detected a further subdivision between and within the Western Mediterranean and the Tyrrhenian Sea due to present-day processes. A pattern of isolation b...
Unstable environment of coastal lagoons drives genetic variation in the amphipod Quadrivisio lutzi
Genetics and Molecular Biology, 2022
The freshwater/brackish amphipod Quadrivisio lutzi inhabits coastal lagoons, highly unstable environments subject to sudden inflow of marine water. Our aim was to evaluate how the genetic composition varies in these populations. Brazilian populations were compared by 16S rRNA and COI gene sequences. The genetic structure of four Rio de Janeiro amphipod populations was evaluated during the period of 2011-2019 by COI. Rio de Janeiro population was compared with Alagoas and São Paulo populations, which was genetically distinct, at species level (16S, d > 7%; COI, d >14%). The genetic structure in Rio de Janeiro showed the Imboassica subpopulation as the most divergent (Imboassica & Carapebus, F ST = 0.238), followed by Lagamar population (Lagamar & Carapebus, F ST = 0.049). The geographic distance and urbanization around these lagoons explain the degree of genetic isolation of these amphipod subpopulations. Paulista and Carapebus populations were not structured. Temporal variation in haplotype number and frequency were evident in both populations that were evaluated (Carapebus and Imboassica). Changes in salinity and water volume variation at these lagoons may be responsible for the observed changes in genetic composition, which may be the results of genetic drift effects over temporally fluctuating size subpopulations, without loss of genetic diversity.
Journal of Experimental Marine Biology and Ecology, 2015
Coastal lagoons are considered one of the most productive areas of our planet harboring a large variety of habitats. Their transitional character, between terrestrial and marine environments, creates a very particular ecosystem with important variations of its environmental conditions. The organisms that are able to survive on these ecosystems frequently experience strong selective pressures and constrictions to gene flow with marine populations, which could contribute to genetic divergence among populations inhabiting coastal lagoon and marine environments. Therefore, the main aims of this study are to asses the genetic diversity and population structure of Holothuria arguinensis across geographical ranges, to test the hypothesis of coastal lagoons as hotspots of genetic diversity in the Ria Formosa lagoon, and to determine the role of exporting standing genetic variation from the lagoon to open sea and their implications to recent geographical expansion events. To reach these objectives, we investigate the genetic structure of H. arguinensis using two mitochondrial DNA markers (COI and 16S) at different spatial scales: i) small, inside Ria Formosa coastal lagoon, South Portugal; 2) large, including most of the geographical distribution of this species (South and Western Portuguese coast and Canary islands); these results will allow us to compare the genetic diversity of lagoonal and marine populations of H. arguinensis. On this framework, its recent geographical expansion events, recorded by Rodrigues (2012) and González-Wangüemert and Borrero-Pérez (2012), will be analyzed considering the potential contribution from lagoonal genetic pool. Non-significant genetic structure and high haplotypic diversity were found inside the Ria Formosa coastal lagoon. Both genes were unable to detect significant genetic differentiation among lagoonal and marine localities, suggesting a high rate of gene flow. The results supported our hypotheses that coastal lagoons are not only acting as hotspots of genetic diversity, but also contributing for the genetic variability of the species, working as a source of new haplotypes and enhancing adaptation to the high variable conditions. Different genetic patterns of colonization were found on H. arguinensis, but they must be studied more deeply.