Connecting quantitative regulatory-network models to the genome (original ) (raw )Inferring quantitative models of regulatory networks from expression data
Iftach Nachman
Bioinformatics, 2004
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Learning global models of transcriptional regulatory networks from data
Aviv Madar
Methods in molecular biology (Clifton, N.J.), 2009
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Inferring latent gene regulatory network kinetics
Ivan Vujacic
Statistical Applications in Genetics and Molecular Biology, 2013
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Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations
HOSSEIN ZARE
BMC Systems Biology, 2009
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Inferring transcriptional regulatory networks from high-throughput data
Ming Zhan
Bioinformatics, 2007
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Inferring gene regulatory networks by integrating static and dynamic data
Lucia Sacchi
International journal of …, 2007
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Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
Julie Dickerson
BMC Bioinformatics, 2011
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Assigning numbers to the arrows: Parameterizing a gene regulation network by using accurate expression kinetics
Michal Ronen
Proceedings of the National Academy of Sciences, 2002
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Modelling in molecular biology: describing transcription regulatory networks at different scales
Alvis Chen
Philosophical Transactions of The Royal Society B: Biological Sciences, 2006
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An Integrated Approach to Reconstructing Genome-Scale Transcriptional Regulatory Networks
Daniel Noguera
PLOS Computational Biology, 2015
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Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis
Reinhard Guthke
BMC Systems Biology, 2010
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Gene regulatory network inference: Data integration in dynamic models—A review
Reinhard Guthke
Biosystems, 2009
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A computational framework for gene regulatory network inference that combines multiple methods and datasets
Philipp Antczak
BMC Systems Biology, 2011
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Curating a Large-Scale Regulatory Network by Evaluating Its Consistency with Expression Datasets
Centre Atlantique
Lecture Notes in Computer Science, 2009
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Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory
Kagan Tuncay
BMC bioinformatics, 2007
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Inferring the conservative causal core of gene regulatory networks
Frank Emmert-Streib
BMC Systems Biology, 2010
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A model-based optimization framework for the inference of regulatory interactions using time-course DNA microarray expression data
Carlos mascagnini paredes
BMC …, 2007
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A guide to gene regulatory network inference for obtaining predictive solutions: Underlying assumptions and fundamental biological and data constraints
Ralf Takors
Biosystems, 2018
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Identifying gene regulatory networks from experimental data
Ting Chen
2001
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Genome-scale bacterial transcriptional regulatory networks: reconstruction and integrated analysis with metabolic models
José Faria
2013
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Inference of gene regulatory networks and compound mode of action from time course gene expression profiles
Giusy della gatta
Bioinformatics, 2006
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Learning transcriptional regulation on a genome scale: a theoretical analysis based on gene expression data
Ming Lok Wu
Briefings in bioinformatics, 2012
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Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles
Jeremiah Faith , James E Collins
PLoS Biology, 2007
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Estimating dynamic models for gene regulation networks
Jiguo Cao
Bioinformatics, 2008
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The Inferelator 2.0: a scalable framework for reconstruction of dynamic regulatory network models
Aviv Madar
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual Conference, 2009
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Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis
Nathan Price
Proceedings of the National Academy of Sciences, 2010
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Faculty of 1000 evaluation for The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states
John McKinney
F1000 - Post-publication peer review of the biomedical literature
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The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
Paul Shannon
Genome Biology, 2006
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A causal inference approach for constructing transcriptional regulatory networks
Mark Van Der Laan
Bioinformatics, 2005
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Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System
Andrew Joyce
PLoS Computational Biology, 2009
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Gene networks as a tool to understand transcriptional regulation
Fábio Vicente
Genetics and molecular research : GMR, 2006
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Modelling the Regulation of Gene Expression in Genetic Regulatory Networks
Maria Schilstra
2001
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Inference of gene regulatory networks using S-system: a unified approach
Lijun Qian
IET Systems Biology, 2010
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