Multistable switches and their role in cellular differentiation networks (original) (raw)

Modeling pathways of differentiation in genetic regulatory networks with Boolean networks

Stuart Kauffman, Sheldon Dealy

Complexity, 2005

View PDFchevron_right

Automatic Design of Boolean Networks for Modelling Cell Differentiation

R. Serra

Evolution, Complexity and Artificial Life, 2013

View PDFchevron_right

Relative stability of network states in Boolean network models of gene regulation in development

Sui Huang

Bio Systems, 2016

View PDFchevron_right

Phenotypic switching in gene regulatory networks

Ramon Grima

Proceedings of the National Academy of Sciences, 2014

View PDFchevron_right

Determining Relative Dynamic Stability of Cell States Using Boolean Network Model

Sui Huang

Scientific Reports, 2018

View PDFchevron_right

Higher order Boolean networks as models of cell state dynamics

Nils Baas

Journal of Theoretical Biology, 2010

View PDFchevron_right

Robustness and fragility of Boolean models for genetic regulatory networks

eduardo sontag

Journal of Theoretical Biology, 2005

View PDFchevron_right

High-dimensional switches and the modelling of cellular differentiation

Jacques Demongeot

Journal of Theoretical Biology, 2005

View PDFchevron_right

Mathematical Analysis of a Multistable Switch Model of Cell Differentiation / High-dimensional Biological Switch / Oscillator, Repressilator

Jomar Rabajante, Cherryl Talaue

Preprint, 2013

View PDFchevron_right

Attractor-Specific and Common Expression Values in Random Boolean Network Models (with a Preliminary Look at Single-Cell Data)

Stuart Kauffman

Entropy, 2022

View PDFchevron_right

A dynamical model of genetic networks describes cell differentiation

Alessia Barbieri

Nature Precedings, 2010

View PDFchevron_right

A dynamical model of genetic networks for cell differentiation

Marco Villani

PLOS One, 2011

View PDFchevron_right

Evolutionary robustness of differentiation in genetic regulatory networks

Chrystopher L Nehaniv

2006

View PDFchevron_right

Function constrains network architecture and dynamics: A case study on the yeast cell cycle Boolean network

Chao Tang

Physical Review E, 2007

View PDFchevron_right

On the underlying assumptions of threshold Boolean networks as a model for genetic regulatory network behavior

Van Tran

Frontiers in Genetics, 2013

View PDFchevron_right

A Comparison of the Boolean and Continuous Dynamics of Three-Gene Regulatory Networks

Dickson Kemboi

Letters in Biomathematics, 2014

View PDFchevron_right

Methods for Characterizing the Epigenetic Attractors Landscape Associated with Boolean Gene Regulatory Networks

Juan Carlos Martínez García

View PDFchevron_right

Random Boolean network models and the yeast transcriptional network

Stuart Kauffman

Proceedings of the National Academy of Sciences, 2003

View PDFchevron_right

Boolean network models of cellular regulation: prospects and limitations

Stefan Bornholdt

Journal of The Royal Society Interface, 2008

View PDFchevron_right

High-dimensional switches and the modeling of cellular differentiation

Jacques Demongeot

Journal of Theoretical Biology 233 391 411, 2005

View PDFchevron_right

Elucidating multi-input processing 3-node gene regulatory network topologies capable of generating striped gene expression patterns

GLORIA MACHADO RODRIGUEZ

2021

View PDFchevron_right

A model of transcriptional regulatory networks based on biases in the observed regulation rules

Stuart Kauffman, B. Sawhill

Complexity, 2002

View PDFchevron_right

Stochastic models for regulatory networks of the genetic toggle switch

Tia Tian

Proceedings of the National Academy of Sciences, 2006

View PDFchevron_right

Steady-state analysis of genetic regulatory networks modelled by probabilistic Boolean networks

Ilyas Ilyas

Comparative and Functional Genomics, 2003

View PDFchevron_right

Structure and timescale analysis in genetic regulatory networks

eduardo sontag

Proceedings of the 45th IEEE Conference on Decision and Control, 2006

View PDFchevron_right

Modeling stochasticity and robustness in gene regulatory networks

Giovanni De Micheli

Bioinformatics, 2009

View PDFchevron_right

Homogeneous and scalable gene expression regulatory networks with random layouts of switching parameters

Dimitri Volchenkov

2003

View PDFchevron_right

Stability Depends on Positive Autoregulation in Boolean Gene Regulatory Networks

Victor Garcia

PLoS Computational Biology, 2014

View PDFchevron_right