Protein secondary structure: Entropy, correlations and prediction (original) (raw)

Coupled prediction of protein secondary and tertiary structure

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Further developments of protein secondary structure prediction using information theory

Barry Robson

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Protein Secondary Structure Prediction: A Review of Progress and Directions

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On the use of secondary structure in protein structure prediction: a bioinformatic analysis

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Entropy Analysis of Protein Sequences Reveals a Hierarchical Organization

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Dmitry Ivankov

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Prediction of Protein Structural Features from Sequence Data Based on Shannon Entropy and Kolmogorov Complexity

Robert Bywater

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Side-chain entropy effects on protein secondary structure formation

Trevor Creamer

Proteins-structure Function and Bioinformatics, 2006

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Estimates of the loss of main‐chain conformational entropy of different residues on protein folding

Debnath Pal

1999

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Prediction of protein secondary structures from conformational biases

Trinh X Hoang

2002

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Review: Protein Secondary Structure Prediction Continues to Rise

Aroob Al.Migdady

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Using maximum entropy model to predict protein secondary structure with single sequence

Quan Gu

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Predicting secondary structures of proteins

Jacek Blazewicz

IEEE Engineering in Medicine and Biology Magazine, 2005

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De novo and inverse folding predictions of protein structure and dynamics

Jeffrey Skolnick

Journal of Computer-Aided Molecular Design, 1993

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Sixty-five years of the long march in protein secondary structure prediction: the final stretch?

Yaoqi Zhou

Briefings in bioinformatics, 2016

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On the use of direct-coupling analysis with a reduced alphabet of amino acids combined with super-secondary structure motifs for protein fold prediction

baldo oliva

NAR Genomics and Bioinformatics, 2021

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Redefining the goals of protein secondary structure prediction

Burkhard Rost

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Combined Approach to Protein Secondary Structure Prediction

Svetlana R Amirova

2004

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Five Hierarchical Levels of Sequence-Structure Correlation in Proteins

Chris Bystroff

Applied Bioinformatics, 2004

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A Novel Methodology for Protein Secondary Structure Prediction Using Physics Principles

Walid Gomaa

Proc. of the 2012 International Conference on Medical Physics and Biomedical Engineering (ICMPBE-2012), 2012

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Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

Wim Vranken

Scientific Reports

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An Entropy Criterion to Detect Minimally Frustrated Intermediates in Native Proteins

Mario Compiani

Proceedings of The National Academy of Sciences, 1998

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De novo prediction of protein folding pathways and structure using the principle of sequential stabilization

Tobin Sosnick

Proceedings of the National Academy of Sciences, 2012

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Early-Stage Folding in Proteins(In Silico)Sequence-to-Structure Relation

Irena Roterman-konieczna

Journal of Biomedicine and Biotechnology, 2005

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Information-theoretic analysis and prediction of protein atomic burials: on the search for an informational intermediate between sequence and structure

Marx Van Der Linden

Bioinformatics, 2012

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Interplay Between Secondary and Tertiary Structure Formation in Protein Folding Cooperativity

Tristan Bereau

Biophysical Journal, 2011

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A Bayesian Model for Protein Secondary Structure Prediction

Hyun Joo

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Distributions of amino acids suggest that certain residue types more effectively determine protein secondary structure

Andrzej Kloczkowski

Journal of Molecular Modeling, 2013

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The Architectural Network for Protein Secondary Structure Prediction

International Journal of Research & Review (IJRR)

https://www.ijrrjournal.com/IJRR\_Vol.3\_Issue.5\_May2016/Abstract\_IJRR0010.html, 2016

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Prediction of secondary structures of proteins using a two-stage method

Fadime Üney-Yüksektepe

Computers & Chemical …, 2008

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